Mercurial > repos > iuc > quast
annotate test-data/test1_mis_ass.tabular @ 8:ebb0dcdb621a draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit e24f6cb40f19bad167b440e119e0300f15e04a78"
author | iuc |
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date | Mon, 03 Feb 2020 17:37:36 -0500 |
parents | f30d03867854 |
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f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
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1 All statistics are based on contigs of size >= 500 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
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2 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
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3 Assembly contig1 contigs2_fna |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
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4 # misassemblies 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
|
5 # contig misassemblies 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
|
6 # c. relocations 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
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7 # c. translocations 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
|
8 # c. inversions 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
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9 # scaffold misassemblies 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
|
10 # s. relocations 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
|
11 # s. translocations 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
|
12 # s. inversions 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
|
13 # misassembled contigs 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
|
14 Misassembled contigs length 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
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15 # local misassemblies 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
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16 # scaffold gap ext. mis. 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
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17 # scaffold gap loc. mis. 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
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18 # misassemblies caused by fragmented reference 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
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19 # possible TEs 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
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20 # unaligned mis. contigs 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
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21 # mismatches 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
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22 # indels 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
|
23 # indels (<= 5 bp) 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
|
24 # indels (> 5 bp) 0 0 |
f30d03867854
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
iuc
parents:
diff
changeset
|
25 Indels length 0 0 |