Mercurial > repos > iuc > quast
comparison test-data/Quast_report_withref_withgenes.tsv @ 3:6fcbee531de6 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
| author | iuc |
|---|---|
| date | Fri, 29 Sep 2017 05:51:26 -0400 |
| parents | |
| children |
comparison
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| 2:2f581f956e1c | 3:6fcbee531de6 |
|---|---|
| 1 Assembly contigs_1_fasta | |
| 2 # contigs (>= 0 bp) 3 | |
| 3 # contigs (>= 1000 bp) 3 | |
| 4 Total length (>= 0 bp) 6710 | |
| 5 Total length (>= 1000 bp) 6710 | |
| 6 # contigs 3 | |
| 7 Largest contig 3980 | |
| 8 Total length 6710 | |
| 9 Reference length 6650 | |
| 10 GC (%) 51.28 | |
| 11 Reference GC (%) 52.00 | |
| 12 N50 3980 | |
| 13 NG50 3980 | |
| 14 N75 1610 | |
| 15 NG75 1610 | |
| 16 L50 1 | |
| 17 LG50 1 | |
| 18 L75 2 | |
| 19 LG75 2 | |
| 20 # misassemblies 0 | |
| 21 # misassembled contigs 0 | |
| 22 Misassembled contigs length 0 | |
| 23 # local misassemblies 0 | |
| 24 # unaligned mis. contigs 0 | |
| 25 # unaligned contigs 0 + 1 part | |
| 26 Unaligned length 1950 | |
| 27 Genome fraction (%) 71.579 | |
| 28 Duplication ratio 1.000 | |
| 29 # N's per 100 kbp 0.00 | |
| 30 # mismatches per 100 kbp 0.00 | |
| 31 # indels per 100 kbp 0.00 | |
| 32 # genes 3 + 3 part | |
| 33 Largest alignment 2030 | |
| 34 Total aligned length 4760 | |
| 35 NA50 1610 | |
| 36 NGA50 1610 | |
| 37 LA50 2 | |
| 38 LGA50 2 |