Mercurial > repos > iuc > quast
comparison test-data/Quast_report_withref_withgenes.tsv @ 3:6fcbee531de6 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit cd130fcce3254cddb9a3f501f43feaa3f37c1b67
author | iuc |
---|---|
date | Fri, 29 Sep 2017 05:51:26 -0400 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
2:2f581f956e1c | 3:6fcbee531de6 |
---|---|
1 Assembly contigs_1_fasta | |
2 # contigs (>= 0 bp) 3 | |
3 # contigs (>= 1000 bp) 3 | |
4 Total length (>= 0 bp) 6710 | |
5 Total length (>= 1000 bp) 6710 | |
6 # contigs 3 | |
7 Largest contig 3980 | |
8 Total length 6710 | |
9 Reference length 6650 | |
10 GC (%) 51.28 | |
11 Reference GC (%) 52.00 | |
12 N50 3980 | |
13 NG50 3980 | |
14 N75 1610 | |
15 NG75 1610 | |
16 L50 1 | |
17 LG50 1 | |
18 L75 2 | |
19 LG75 2 | |
20 # misassemblies 0 | |
21 # misassembled contigs 0 | |
22 Misassembled contigs length 0 | |
23 # local misassemblies 0 | |
24 # unaligned mis. contigs 0 | |
25 # unaligned contigs 0 + 1 part | |
26 Unaligned length 1950 | |
27 Genome fraction (%) 71.579 | |
28 Duplication ratio 1.000 | |
29 # N's per 100 kbp 0.00 | |
30 # mismatches per 100 kbp 0.00 | |
31 # indels per 100 kbp 0.00 | |
32 # genes 3 + 3 part | |
33 Largest alignment 2030 | |
34 Total aligned length 4760 | |
35 NA50 1610 | |
36 NGA50 1610 | |
37 LA50 2 | |
38 LGA50 2 |