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comparison test-data/test1.tabular @ 6:f30d03867854 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 911441d53ac3a7a229c448d66101bcd9179e771b
author iuc
date Wed, 06 Mar 2019 14:09:08 -0500
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5:81df4950d65b 6:f30d03867854
1 Assembly contig1 contigs2_fna
2 # contigs (>= 0 bp) 3 1
3 # contigs (>= 1000 bp) 3 1
4 Total length (>= 0 bp) 6710 6650
5 Total length (>= 1000 bp) 6710 6650
6 # contigs 3 1
7 Largest contig 3980 6650
8 Total length 6710 6650
9 Reference length 6650 6650
10 GC (%) 51.28 52.00
11 Reference GC (%) 52.00 52.00
12 N50 3980 6650
13 NG50 3980 6650
14 N75 1610 6650
15 NG75 1610 6650
16 L50 1 1
17 LG50 1 1
18 L75 2 1
19 LG75 2 1
20 # misassemblies 0 0
21 # misassembled contigs 0 0
22 Misassembled contigs length 0 0
23 # local misassemblies 0 0
24 # scaffold gap ext. mis. 0 0
25 # scaffold gap loc. mis. 0 0
26 # possible TEs 0 0
27 # unaligned mis. contigs 0 0
28 # unaligned contigs 0 + 1 part 0 + 0 part
29 Unaligned length 1950 0
30 Genome fraction (%) 71.579 100.000
31 Duplication ratio 1.000 1.000
32 # N's per 100 kbp 0.00 0.00
33 # mismatches per 100 kbp 0.00 0.00
34 # indels per 100 kbp 0.00 0.00
35 # genomic features 7 + 7 part 13 + 1 part
36 # predicted rRNA genes 0 + 0 part 0 + 0 part
37 Largest alignment 2030 6650
38 Total aligned length 4760 6650
39 NA50 1610 6650
40 NGA50 1610 6650
41 NA75 - 6650
42 NGA75 - 6650
43 LA50 2 1
44 LGA50 2 1
45 LA75 - 1
46 LGA75 - 1
47 K-mer-based compl. (%) 68.09 100.00
48 K-mer-based cor. length (%) 100.00 100.00
49 K-mer-based mis. length (%) 0.00 0.00
50 # k-mer-based misjoins 0 0