Mercurial > repos > iuc > quast
diff test-data/operons.bed @ 9:45924fa8d8c5 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
| author | iuc |
|---|---|
| date | Mon, 08 Nov 2021 09:03:00 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/operons.bed Mon Nov 08 09:03:00 2021 +0000 @@ -0,0 +1,1450 @@ + + + + + + +<!DOCTYPE html> +<html lang="en" data-color-mode="auto" data-light-theme="light" data-dark-theme="dark"> + <head> + <meta charset="utf-8"> + <link rel="dns-prefetch" href="https://github.githubassets.com"> + <link rel="dns-prefetch" href="https://avatars.githubusercontent.com"> + <link rel="dns-prefetch" href="https://github-cloud.s3.amazonaws.com"> + <link rel="dns-prefetch" href="https://user-images.githubusercontent.com/"> + <link rel="preconnect" href="https://github.githubassets.com" crossorigin> + <link rel="preconnect" href="https://avatars.githubusercontent.com"> + + + + <link crossorigin="anonymous" media="all" integrity="sha512-L06pZD/4Yecj8D8pY5aYfA7oKG6CI8/hlx2K9ZlXOS/j5TnYEjrusaVa9ZIb9O3/tBHmnRFLzaC1ixcafWtaAg==" rel="stylesheet" href="https://github.githubassets.com/assets/light-2f4ea9643ff861e723f03f296396987c.css" /><link 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pr-3">→</span></a></li> + </ul> + </div> + </details> + </li> + </ul> + </nav> + + <div class="d-lg-flex flex-items-center px-3 px-lg-0 text-center text-lg-left"> + <div class="d-lg-flex min-width-0 mb-3 mb-lg-0"> + + + + +<div class="header-search flex-auto js-site-search position-relative flex-self-stretch flex-md-self-auto mb-3 mb-md-0 mr-0 mr-md-3 scoped-search site-scoped-search js-jump-to" +> + <div class="position-relative"> + <!-- '"` --><!-- </textarea></xmp> --></option></form><form class="js-site-search-form" role="search" aria-label="Site" data-scope-type="Repository" data-scope-id="4779828" data-scoped-search-url="/ablab/quast/search" data-owner-scoped-search-url="/orgs/ablab/search" data-unscoped-search-url="/search" action="/ablab/quast/search" accept-charset="UTF-8" method="get"> + <label class="form-control input-sm header-search-wrapper p-0 js-chromeless-input-container header-search-wrapper-jump-to position-relative d-flex flex-justify-between flex-items-center"> + <input type="text" + class="form-control input-sm header-search-input jump-to-field js-jump-to-field js-site-search-focus js-site-search-field is-clearable" + data-hotkey=s,/ + name="q" + data-test-selector="nav-search-input" + placeholder="Search" + data-unscoped-placeholder="Search GitHub" + data-scoped-placeholder="Search" + autocapitalize="off" + role="combobox" + aria-haspopup="listbox" + aria-expanded="false" + aria-autocomplete="list" + aria-controls="jump-to-results" + aria-label="Search" + data-jump-to-suggestions-path="/_graphql/GetSuggestedNavigationDestinations" + spellcheck="false" + autocomplete="off" + > + <input type="hidden" data-csrf="true" class="js-data-jump-to-suggestions-path-csrf" value="YYuHOzCyBVR2hxlarEw7MGEByitYzcY35U7PPYxwqJO+Ns4II1uq+HYht//to/EATMDOBG9LMR/KFmfuol4WPQ==" /> + <input type="hidden" class="js-site-search-type-field" name="type" > + <svg xmlns="http://www.w3.org/2000/svg" width="22" height="20" aria-hidden="true" class="mr-1 header-search-key-slash"><path fill="none" stroke="#979A9C" opacity=".4" d="M3.5.5h12c1.7 0 3 1.3 3 3v13c0 1.7-1.3 3-3 3h-12c-1.7 0-3-1.3-3-3v-13c0-1.7 1.3-3 3-3z"></path><path fill="#979A9C" d="M11.8 6L8 15.1h-.9L10.8 6h1z"></path></svg> + + + <div class="Box position-absolute overflow-hidden d-none jump-to-suggestions js-jump-to-suggestions-container"> + +<ul class="d-none js-jump-to-suggestions-template-container"> + + +<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-suggestion" role="option"> + <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="" data-item-type="suggestion"> + <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> + <svg title="Repository" aria-label="Repository" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo js-jump-to-octicon-repo d-none flex-shrink-0"> + <path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path> +</svg> + <svg title="Project" aria-label="Project" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-project js-jump-to-octicon-project d-none flex-shrink-0"> + <path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path> +</svg> + <svg title="Search" aria-label="Search" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-search js-jump-to-octicon-search d-none flex-shrink-0"> + <path fill-rule="evenodd" d="M11.5 7a4.499 4.499 0 11-8.998 0A4.499 4.499 0 0111.5 7zm-.82 4.74a6 6 0 111.06-1.06l3.04 3.04a.75.75 0 11-1.06 1.06l-3.04-3.04z"></path> +</svg> + </div> + + <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> + + <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> + </div> + + <div class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none js-jump-to-badge-search"> + <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> + In this repository + </span> + <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> + All GitHub + </span> + <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + + <div aria-hidden="true" class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> + Jump to + <span class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + </a> +</li> + +</ul> + +<ul class="d-none js-jump-to-no-results-template-container"> + <li class="d-flex flex-justify-center flex-items-center f5 d-none js-jump-to-suggestion p-2"> + <span class="color-text-secondary">No suggested jump to results</span> + </li> +</ul> + +<ul id="jump-to-results" role="listbox" class="p-0 m-0 js-navigation-container jump-to-suggestions-results-container js-jump-to-suggestions-results-container"> + + +<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-scoped-search d-none" role="option"> + <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="" data-item-type="scoped_search"> + <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> + <svg title="Repository" aria-label="Repository" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo js-jump-to-octicon-repo d-none flex-shrink-0"> + <path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path> +</svg> + <svg title="Project" aria-label="Project" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-project js-jump-to-octicon-project d-none flex-shrink-0"> + <path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path> +</svg> + <svg title="Search" aria-label="Search" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-search js-jump-to-octicon-search d-none flex-shrink-0"> + <path fill-rule="evenodd" d="M11.5 7a4.499 4.499 0 11-8.998 0A4.499 4.499 0 0111.5 7zm-.82 4.74a6 6 0 111.06-1.06l3.04 3.04a.75.75 0 11-1.06 1.06l-3.04-3.04z"></path> +</svg> + </div> + + <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> + + <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> + </div> + + <div class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none js-jump-to-badge-search"> + <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> + In this repository + </span> + <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> + All GitHub + </span> + <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + + <div aria-hidden="true" class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> + Jump to + <span class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + </a> +</li> + + + +<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-owner-scoped-search d-none" role="option"> + <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="" data-item-type="owner_scoped_search"> + <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> + <svg title="Repository" aria-label="Repository" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo js-jump-to-octicon-repo d-none flex-shrink-0"> + <path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path> +</svg> + <svg title="Project" aria-label="Project" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-project js-jump-to-octicon-project d-none flex-shrink-0"> + <path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path> +</svg> + <svg title="Search" aria-label="Search" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-search js-jump-to-octicon-search d-none flex-shrink-0"> + <path fill-rule="evenodd" d="M11.5 7a4.499 4.499 0 11-8.998 0A4.499 4.499 0 0111.5 7zm-.82 4.74a6 6 0 111.06-1.06l3.04 3.04a.75.75 0 11-1.06 1.06l-3.04-3.04z"></path> +</svg> + </div> + + <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> + + <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> + </div> + + <div class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none js-jump-to-badge-search"> + <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this organization"> + In this organization + </span> + <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> + All GitHub + </span> + <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + + <div aria-hidden="true" class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> + Jump to + <span class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + </a> +</li> + + + +<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-global-search d-none" role="option"> + <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="" data-item-type="global_search"> + <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> + <svg title="Repository" aria-label="Repository" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo js-jump-to-octicon-repo d-none flex-shrink-0"> + <path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path> +</svg> + <svg title="Project" aria-label="Project" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-project js-jump-to-octicon-project d-none flex-shrink-0"> + <path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path> +</svg> + <svg title="Search" aria-label="Search" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-search js-jump-to-octicon-search d-none flex-shrink-0"> + <path fill-rule="evenodd" d="M11.5 7a4.499 4.499 0 11-8.998 0A4.499 4.499 0 0111.5 7zm-.82 4.74a6 6 0 111.06-1.06l3.04 3.04a.75.75 0 11-1.06 1.06l-3.04-3.04z"></path> +</svg> + </div> + + <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> + + <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> + </div> + + <div class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none js-jump-to-badge-search"> + <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> + In this repository + </span> + <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> + All GitHub + </span> + <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + + <div aria-hidden="true" class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> + Jump to + <span class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + </a> +</li> + + +</ul> + + </div> + </label> +</form> </div> +</div> + + </div> + + <div class="position-relative mr-3 mb-4 mb-lg-0 d-inline-block"> + <a href="/login?return_to=https%3A%2F%2Fgithub.com%2Fablab%2Fquast%2Fblob%2Fmaster%2Ftest_data%2Foperons.bed" + class="HeaderMenu-link flex-shrink-0 no-underline" + data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","originating_url":"https://github.com/ablab/quast/blob/master/test_data/operons.bed","user_id":null}}" data-hydro-click-hmac="9635d7229c5865e5fdb246baaca922cd7b61697e759e69f6c8bf3b6afce4bed9" + data-ga-click="(Logged out) Header, clicked Sign in, text:sign-in"> + Sign in + </a> + </div> + + <a href="/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E%2Fblob%2Fshow&source=header-repo&source_repo=ablab%2Fquast" + class="HeaderMenu-link flex-shrink-0 d-inline-block no-underline border color-border-default rounded px-2 py-1" + data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","originating_url":"https://github.com/ablab/quast/blob/master/test_data/operons.bed","user_id":null}}" data-hydro-click-hmac="9635d7229c5865e5fdb246baaca922cd7b61697e759e69f6c8bf3b6afce4bed9" + data-hydro-click="{"event_type":"analytics.event","payload":{"category":"Sign up","action":"click to sign up for account","label":"ref_page:/<user-name>/<repo-name>/blob/show;ref_cta:Sign up;ref_loc:header logged out","originating_url":"https://github.com/ablab/quast/blob/master/test_data/operons.bed","user_id":null}}" data-hydro-click-hmac="412b3afbd40b01fd7bf57be6c2e65dc7ecaa693c252d6307ffd8c8b86a842145" data-analytics-event="{"category":"Sign up","action":"click to sign up for account","label":"ref_page:/<user-name>/<repo-name>/blob/show;ref_cta:Sign up;ref_loc:header logged out"}" + > + Sign up + </a> + </div> + </div> + </div> +</header> + + </div> + + <div id="start-of-content" class="show-on-focus"></div> + + + + + + + <div data-pjax-replace id="js-flash-container"> + + + <template class="js-flash-template"> + <div class="flash flash-full {{ className }}"> + <div class=" px-2" > + <button class="flash-close js-flash-close" type="button" aria-label="Dismiss this message"> + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-x"> + <path fill-rule="evenodd" d="M3.72 3.72a.75.75 0 011.06 0L8 6.94l3.22-3.22a.75.75 0 111.06 1.06L9.06 8l3.22 3.22a.75.75 0 11-1.06 1.06L8 9.06l-3.22 3.22a.75.75 0 01-1.06-1.06L6.94 8 3.72 4.78a.75.75 0 010-1.06z"></path> +</svg> + </button> + + <div>{{ message }}</div> + + </div> +</div> + </template> +</div> + + + + + <include-fragment class="js-notification-shelf-include-fragment" data-base-src="https://github.com/notifications/beta/shelf"></include-fragment> + + + + + + <div + class="application-main " + data-commit-hovercards-enabled + data-discussion-hovercards-enabled + data-issue-and-pr-hovercards-enabled + > + <div itemscope itemtype="http://schema.org/SoftwareSourceCode" class=""> + <main id="js-repo-pjax-container" data-pjax-container > + + + + + + + + + + + <include-fragment src="/orgs/ablab/survey_banner" data-test-selector="survey-banner-selector"> + </include-fragment> + + + + <div id="repository-container-header" class="pt-3 hide-full-screen mb-5" style="background-color: var(--color-page-header-bg);" data-pjax-replace> + + <div class="d-flex mb-3 px-3 px-md-4 px-lg-5"> + + <div class="flex-auto min-width-0 width-fit mr-3"> + <h1 class=" d-flex flex-wrap flex-items-center wb-break-word f3 text-normal"> + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo color-icon-secondary mr-2"> + <path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path> +</svg> + <span class="author flex-self-stretch" itemprop="author"> + <a class="url fn" rel="author" data-hovercard-type="organization" data-hovercard-url="/orgs/ablab/hovercard" href="/ablab">ablab</a> + </span> + <span class="mx-1 flex-self-stretch color-fg-muted">/</span> + <strong itemprop="name" class="mr-2 flex-self-stretch"> + <a data-pjax="#js-repo-pjax-container" href="/ablab/quast">quast</a> + </strong> + + <span></span><span class="Label Label--secondary v-align-middle mr-1">Public</span> +</h1> + + </div> + + <ul class="pagehead-actions flex-shrink-0 d-none d-md-inline" style="padding: 2px 0;"> + + <li> + <a href="/login?return_to=%2Fablab%2Fquast" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"notification subscription menu watch","repository_id":null,"auth_type":"LOG_IN","originating_url":"https://github.com/ablab/quast/blob/master/test_data/operons.bed","user_id":null}}" data-hydro-click-hmac="017178397178d2456bb21c8908c795f43e4b116ba0d5b463abcac053bb4a2dac" aria-label="You must be signed in to change notification settings" role="button" data-view-component="true" class="tooltipped tooltipped-s btn-sm btn"> + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-bell"> + <path d="M8 16a2 2 0 001.985-1.75c.017-.137-.097-.25-.235-.25h-3.5c-.138 0-.252.113-.235.25A2 2 0 008 16z"></path><path fill-rule="evenodd" d="M8 1.5A3.5 3.5 0 004.5 5v2.947c0 .346-.102.683-.294.97l-1.703 2.556a.018.018 0 00-.003.01l.001.006c0 .002.002.004.004.006a.017.017 0 00.006.004l.007.001h10.964l.007-.001a.016.016 0 00.006-.004.016.016 0 00.004-.006l.001-.007a.017.017 0 00-.003-.01l-1.703-2.554a1.75 1.75 0 01-.294-.97V5A3.5 3.5 0 008 1.5zM3 5a5 5 0 0110 0v2.947c0 .05.015.098.042.139l1.703 2.555A1.518 1.518 0 0113.482 13H2.518a1.518 1.518 0 01-1.263-2.36l1.703-2.554A.25.25 0 003 7.947V5z"></path> +</svg> + + Notifications + + + +</a> + </li> + + + <li> + <div > + <a href="/login?return_to=%2Fablab%2Fquast" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"star button","repository_id":4779828,"auth_type":"LOG_IN","originating_url":"https://github.com/ablab/quast/blob/master/test_data/operons.bed","user_id":null}}" data-hydro-click-hmac="53f6ed2bb8589410c2b71dfe874e61e449226ada8340423e06d438f414b74bad" aria-label="You must be signed in to star a repository" role="button" data-view-component="true" class="tooltipped tooltipped-s btn-with-count btn-sm btn"> + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-star v-align-text-bottom mr-1"> + <path fill-rule="evenodd" d="M8 .25a.75.75 0 01.673.418l1.882 3.815 4.21.612a.75.75 0 01.416 1.279l-3.046 2.97.719 4.192a.75.75 0 01-1.088.791L8 12.347l-3.766 1.98a.75.75 0 01-1.088-.79l.72-4.194L.818 6.374a.75.75 0 01.416-1.28l4.21-.611L7.327.668A.75.75 0 018 .25zm0 2.445L6.615 5.5a.75.75 0 01-.564.41l-3.097.45 2.24 2.184a.75.75 0 01.216.664l-.528 3.084 2.769-1.456a.75.75 0 01.698 0l2.77 1.456-.53-3.084a.75.75 0 01.216-.664l2.24-2.183-3.096-.45a.75.75 0 01-.564-.41L8 2.694v.001z"></path> +</svg> + + <span data-view-component="true"> + Star +</span> + + +</a> <a + class="social-count js-social-count" + href="/ablab/quast/stargazers" + aria-label="210 users starred this repository" + data-singular-suffix="user starred this repository" + data-plural-suffix="users starred this repository" + > + 210 + </a> + </div> + + </li> + + <li> + <a href="/login?return_to=%2Fablab%2Fquast" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"repo details fork button","repository_id":4779828,"auth_type":"LOG_IN","originating_url":"https://github.com/ablab/quast/blob/master/test_data/operons.bed","user_id":null}}" data-hydro-click-hmac="ceb5f94673d572ff7880e8ef9bf54f18e29dfd31a26c1be2f1e3af7c4a7a62a1" aria-label="You must be signed in to fork a repository" role="button" data-view-component="true" class="tooltipped tooltipped-s btn-with-count btn-sm btn"> + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo-forked"> + <path fill-rule="evenodd" d="M5 3.25a.75.75 0 11-1.5 0 .75.75 0 011.5 0zm0 2.122a2.25 2.25 0 10-1.5 0v.878A2.25 2.25 0 005.75 8.5h1.5v2.128a2.251 2.251 0 101.5 0V8.5h1.5a2.25 2.25 0 002.25-2.25v-.878a2.25 2.25 0 10-1.5 0v.878a.75.75 0 01-.75.75h-4.5A.75.75 0 015 6.25v-.878zm3.75 7.378a.75.75 0 11-1.5 0 .75.75 0 011.5 0zm3-8.75a.75.75 0 100-1.5.75.75 0 000 1.5z"></path> +</svg> + + Fork + + + +</a> + <a + href="/ablab/quast/network/members" + class="social-count" + aria-label="52 users forked this repository" + > + 52 + </a> + + </li> + + + <li> + + + </li> +</ul> + + </div> + + <div id="responsive-meta-container" data-pjax-replace> +</div> + + + +<nav data-pjax="#js-repo-pjax-container" aria-label="Repository" data-view-component="true" class="js-repo-nav js-sidenav-container-pjax js-responsive-underlinenav overflow-hidden UnderlineNav px-3 px-md-4 px-lg-5"> + + <ul data-view-component="true" class="UnderlineNav-body list-style-none"> + <li data-view-component="true" class="d-inline-flex"> + <a id="code-tab" href="/ablab/quast" data-tab-item="i0code-tab" data-selected-links="repo_source repo_downloads repo_commits repo_releases repo_tags repo_branches repo_packages repo_deployments /ablab/quast" data-hotkey="g c" data-ga-click="Repository, Navigation click, Code tab" data-pjax="#repo-content-pjax-container" aria-current="page" data-view-component="true" class="UnderlineNav-item hx_underlinenav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item selected"> + + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-code UnderlineNav-octicon d-none d-sm-inline"> + <path fill-rule="evenodd" d="M4.72 3.22a.75.75 0 011.06 1.06L2.06 8l3.72 3.72a.75.75 0 11-1.06 1.06L.47 8.53a.75.75 0 010-1.06l4.25-4.25zm6.56 0a.75.75 0 10-1.06 1.06L13.94 8l-3.72 3.72a.75.75 0 101.06 1.06l4.25-4.25a.75.75 0 000-1.06l-4.25-4.25z"></path> +</svg> + <span data-content="Code">Code</span> + <span id="code-repo-tab-count" data-pjax-replace="" title="Not available" data-view-component="true" class="Counter"></span> + + + +</a></li> + <li data-view-component="true" class="d-inline-flex"> + <a id="issues-tab" href="/ablab/quast/issues" data-tab-item="i1issues-tab" data-selected-links="repo_issues repo_labels repo_milestones /ablab/quast/issues" data-hotkey="g i" data-ga-click="Repository, Navigation click, Issues tab" data-pjax="#repo-content-pjax-container" data-view-component="true" class="UnderlineNav-item hx_underlinenav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item"> + + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-issue-opened UnderlineNav-octicon d-none d-sm-inline"> + <path d="M8 9.5a1.5 1.5 0 100-3 1.5 1.5 0 000 3z"></path><path fill-rule="evenodd" d="M8 0a8 8 0 100 16A8 8 0 008 0zM1.5 8a6.5 6.5 0 1113 0 6.5 6.5 0 01-13 0z"></path> +</svg> + <span data-content="Issues">Issues</span> + <span id="issues-repo-tab-count" data-pjax-replace="" title="40" data-view-component="true" class="Counter">40</span> + + + +</a></li> + <li data-view-component="true" class="d-inline-flex"> + <a id="pull-requests-tab" href="/ablab/quast/pulls" data-tab-item="i2pull-requests-tab" data-selected-links="repo_pulls checks /ablab/quast/pulls" data-hotkey="g p" data-ga-click="Repository, Navigation click, Pull requests tab" data-pjax="#repo-content-pjax-container" data-view-component="true" class="UnderlineNav-item hx_underlinenav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item"> + + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-git-pull-request UnderlineNav-octicon d-none d-sm-inline"> + <path fill-rule="evenodd" d="M7.177 3.073L9.573.677A.25.25 0 0110 .854v4.792a.25.25 0 01-.427.177L7.177 3.427a.25.25 0 010-.354zM3.75 2.5a.75.75 0 100 1.5.75.75 0 000-1.5zm-2.25.75a2.25 2.25 0 113 2.122v5.256a2.251 2.251 0 11-1.5 0V5.372A2.25 2.25 0 011.5 3.25zM11 2.5h-1V4h1a1 1 0 011 1v5.628a2.251 2.251 0 101.5 0V5A2.5 2.5 0 0011 2.5zm1 10.25a.75.75 0 111.5 0 .75.75 0 01-1.5 0zM3.75 12a.75.75 0 100 1.5.75.75 0 000-1.5z"></path> +</svg> + <span data-content="Pull requests">Pull requests</span> + <span id="pull-requests-repo-tab-count" data-pjax-replace="" title="2" data-view-component="true" class="Counter">2</span> + + + +</a></li> + <li data-view-component="true" class="d-inline-flex"> + <a id="discussions-tab" href="/ablab/quast/discussions" data-tab-item="i3discussions-tab" data-selected-links="repo_discussions /ablab/quast/discussions" data-hotkey="g g" data-ga-click="Repository, Navigation click, Discussions tab" data-pjax="#repo-content-pjax-container" data-view-component="true" class="UnderlineNav-item hx_underlinenav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item"> + + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-comment-discussion UnderlineNav-octicon d-none d-sm-inline"> + <path fill-rule="evenodd" d="M1.5 2.75a.25.25 0 01.25-.25h8.5a.25.25 0 01.25.25v5.5a.25.25 0 01-.25.25h-3.5a.75.75 0 00-.53.22L3.5 11.44V9.25a.75.75 0 00-.75-.75h-1a.25.25 0 01-.25-.25v-5.5zM1.75 1A1.75 1.75 0 000 2.75v5.5C0 9.216.784 10 1.75 10H2v1.543a1.457 1.457 0 002.487 1.03L7.061 10h3.189A1.75 1.75 0 0012 8.25v-5.5A1.75 1.75 0 0010.25 1h-8.5zM14.5 4.75a.25.25 0 00-.25-.25h-.5a.75.75 0 110-1.5h.5c.966 0 1.75.784 1.75 1.75v5.5A1.75 1.75 0 0114.25 12H14v1.543a1.457 1.457 0 01-2.487 1.03L9.22 12.28a.75.75 0 111.06-1.06l2.22 2.22v-2.19a.75.75 0 01.75-.75h1a.25.25 0 00.25-.25v-5.5z"></path> +</svg> + <span data-content="Discussions">Discussions</span> + <span id="discussions-repo-tab-count" data-pjax-replace="" title="Not available" data-view-component="true" class="Counter"></span> + + + +</a></li> + <li data-view-component="true" class="d-inline-flex"> + <a id="actions-tab" href="/ablab/quast/actions" data-tab-item="i4actions-tab" data-selected-links="repo_actions /ablab/quast/actions" data-hotkey="g a" data-ga-click="Repository, Navigation click, Actions tab" data-pjax="#repo-content-pjax-container" data-view-component="true" class="UnderlineNav-item hx_underlinenav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item"> + + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-play UnderlineNav-octicon d-none d-sm-inline"> + <path fill-rule="evenodd" d="M1.5 8a6.5 6.5 0 1113 0 6.5 6.5 0 01-13 0zM8 0a8 8 0 100 16A8 8 0 008 0zM6.379 5.227A.25.25 0 006 5.442v5.117a.25.25 0 00.379.214l4.264-2.559a.25.25 0 000-.428L6.379 5.227z"></path> +</svg> + <span data-content="Actions">Actions</span> + <span id="actions-repo-tab-count" data-pjax-replace="" title="Not available" data-view-component="true" class="Counter"></span> + + + +</a></li> + <li data-view-component="true" class="d-inline-flex"> + <a id="projects-tab" href="/ablab/quast/projects" data-tab-item="i5projects-tab" data-selected-links="repo_projects new_repo_project repo_project /ablab/quast/projects" data-hotkey="g b" data-ga-click="Repository, Navigation click, Projects tab" data-view-component="true" class="UnderlineNav-item hx_underlinenav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item"> + + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-project UnderlineNav-octicon d-none d-sm-inline"> + <path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path> +</svg> + <span data-content="Projects">Projects</span> + <span id="projects-repo-tab-count" data-pjax-replace="" title="0" hidden="hidden" data-view-component="true" class="Counter">0</span> + + + +</a></li> + <li data-view-component="true" class="d-inline-flex"> + <a id="wiki-tab" href="/ablab/quast/wiki" data-tab-item="i6wiki-tab" data-selected-links="repo_wiki /ablab/quast/wiki" data-hotkey="g w" data-ga-click="Repository, Navigation click, Wikis tab" data-view-component="true" class="UnderlineNav-item hx_underlinenav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item"> + + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-book UnderlineNav-octicon d-none d-sm-inline"> + <path fill-rule="evenodd" d="M0 1.75A.75.75 0 01.75 1h4.253c1.227 0 2.317.59 3 1.501A3.744 3.744 0 0111.006 1h4.245a.75.75 0 01.75.75v10.5a.75.75 0 01-.75.75h-4.507a2.25 2.25 0 00-1.591.659l-.622.621a.75.75 0 01-1.06 0l-.622-.621A2.25 2.25 0 005.258 13H.75a.75.75 0 01-.75-.75V1.75zm8.755 3a2.25 2.25 0 012.25-2.25H14.5v9h-3.757c-.71 0-1.4.201-1.992.572l.004-7.322zm-1.504 7.324l.004-5.073-.002-2.253A2.25 2.25 0 005.003 2.5H1.5v9h3.757a3.75 3.75 0 011.994.574z"></path> +</svg> + <span data-content="Wiki">Wiki</span> + <span id="wiki-repo-tab-count" data-pjax-replace="" title="Not available" data-view-component="true" class="Counter"></span> + + + +</a></li> + <li data-view-component="true" class="d-inline-flex"> + <a id="security-tab" href="/ablab/quast/security" data-tab-item="i7security-tab" data-selected-links="security overview alerts policy token_scanning code_scanning /ablab/quast/security" data-hotkey="g s" data-ga-click="Repository, Navigation click, Security tab" data-pjax="#repo-content-pjax-container" data-view-component="true" class="UnderlineNav-item hx_underlinenav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item"> + + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-shield UnderlineNav-octicon d-none d-sm-inline"> + <path fill-rule="evenodd" d="M7.467.133a1.75 1.75 0 011.066 0l5.25 1.68A1.75 1.75 0 0115 3.48V7c0 1.566-.32 3.182-1.303 4.682-.983 1.498-2.585 2.813-5.032 3.855a1.7 1.7 0 01-1.33 0c-2.447-1.042-4.049-2.357-5.032-3.855C1.32 10.182 1 8.566 1 7V3.48a1.75 1.75 0 011.217-1.667l5.25-1.68zm.61 1.429a.25.25 0 00-.153 0l-5.25 1.68a.25.25 0 00-.174.238V7c0 1.358.275 2.666 1.057 3.86.784 1.194 2.121 2.34 4.366 3.297a.2.2 0 00.154 0c2.245-.956 3.582-2.104 4.366-3.298C13.225 9.666 13.5 8.36 13.5 7V3.48a.25.25 0 00-.174-.237l-5.25-1.68zM9 10.5a1 1 0 11-2 0 1 1 0 012 0zm-.25-5.75a.75.75 0 10-1.5 0v3a.75.75 0 001.5 0v-3z"></path> +</svg> + <span data-content="Security">Security</span> + <include-fragment src="/ablab/quast/security/overall-count" accept="text/fragment+html"></include-fragment> + + +</a></li> + <li data-view-component="true" class="d-inline-flex"> + <a id="insights-tab" href="/ablab/quast/pulse" data-tab-item="i8insights-tab" data-selected-links="repo_graphs repo_contributors dependency_graph dependabot_updates pulse people community /ablab/quast/pulse" data-ga-click="Repository, Navigation click, Insights tab" data-view-component="true" class="UnderlineNav-item hx_underlinenav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item"> + + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-graph UnderlineNav-octicon d-none d-sm-inline"> + <path fill-rule="evenodd" d="M1.5 1.75a.75.75 0 00-1.5 0v12.5c0 .414.336.75.75.75h14.5a.75.75 0 000-1.5H1.5V1.75zm14.28 2.53a.75.75 0 00-1.06-1.06L10 7.94 7.53 5.47a.75.75 0 00-1.06 0L3.22 8.72a.75.75 0 001.06 1.06L7 7.06l2.47 2.47a.75.75 0 001.06 0l5.25-5.25z"></path> +</svg> + <span data-content="Insights">Insights</span> + <span id="insights-repo-tab-count" data-pjax-replace="" title="Not available" data-view-component="true" class="Counter"></span> + + + +</a></li> +</ul> + <div style="visibility:hidden;" data-view-component="true" class="UnderlineNav-actions js-responsive-underlinenav-overflow position-absolute pr-3 pr-md-4 pr-lg-5 right-0"> <details data-view-component="true" class="details-overlay details-reset position-relative"> + <summary role="button" data-view-component="true"> <div class="UnderlineNav-item mr-0 border-0"> + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-kebab-horizontal"> + <path d="M8 9a1.5 1.5 0 100-3 1.5 1.5 0 000 3zM1.5 9a1.5 1.5 0 100-3 1.5 1.5 0 000 3zm13 0a1.5 1.5 0 100-3 1.5 1.5 0 000 3z"></path> +</svg> + <span class="sr-only">More</span> + </div> +</summary> + <div data-view-component="true"> <details-menu role="menu" data-view-component="true" class="dropdown-menu dropdown-menu-sw"> + + <ul> + <li data-menu-item="i0code-tab" hidden> + <a role="menuitem" class="js-selected-navigation-item selected dropdown-item" aria-current="page" data-selected-links="repo_source repo_downloads repo_commits repo_releases repo_tags repo_branches repo_packages repo_deployments /ablab/quast" href="/ablab/quast"> + Code +</a> </li> + <li data-menu-item="i1issues-tab" hidden> + <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_issues repo_labels repo_milestones /ablab/quast/issues" href="/ablab/quast/issues"> + Issues +</a> </li> + <li data-menu-item="i2pull-requests-tab" hidden> + <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_pulls checks /ablab/quast/pulls" href="/ablab/quast/pulls"> + Pull requests +</a> </li> + <li data-menu-item="i3discussions-tab" hidden> + <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_discussions /ablab/quast/discussions" href="/ablab/quast/discussions"> + Discussions +</a> </li> + <li data-menu-item="i4actions-tab" hidden> + <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_actions /ablab/quast/actions" href="/ablab/quast/actions"> + Actions +</a> </li> + <li data-menu-item="i5projects-tab" hidden> + <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_projects new_repo_project repo_project /ablab/quast/projects" href="/ablab/quast/projects"> + Projects +</a> </li> + <li data-menu-item="i6wiki-tab" hidden> + <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_wiki /ablab/quast/wiki" href="/ablab/quast/wiki"> + Wiki +</a> </li> + <li data-menu-item="i7security-tab" hidden> + <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="security overview alerts policy token_scanning code_scanning /ablab/quast/security" href="/ablab/quast/security"> + Security +</a> </li> + <li data-menu-item="i8insights-tab" hidden> + <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_graphs repo_contributors dependency_graph dependabot_updates pulse people community /ablab/quast/pulse" href="/ablab/quast/pulse"> + Insights +</a> </li> + </ul> + +</details-menu></div> +</details></div> +</nav> + </div> + + + +<div class="clearfix new-discussion-timeline container-xl px-3 px-md-4 px-lg-5"> + <div id="repo-content-pjax-container" class="repository-content " > + + + + + + + + +<div> + + + + <a class="d-none js-permalink-shortcut" data-hotkey="y" href="/ablab/quast/blob/06874b82b13f750cba13c8c6f283818b909c4f1b/test_data/operons.bed">Permalink</a> + + <div class="d-flex flex-items-start flex-shrink-0 pb-3 flex-wrap flex-md-nowrap flex-justify-between flex-md-justify-start"> + +<div class="position-relative"> + <details class="details-reset details-overlay mr-0 mb-0 " id="branch-select-menu"> + <summary class="btn css-truncate" + data-hotkey="w" + title="Switch branches or tags"> + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-git-branch"> + <path fill-rule="evenodd" d="M11.75 2.5a.75.75 0 100 1.5.75.75 0 000-1.5zm-2.25.75a2.25 2.25 0 113 2.122V6A2.5 2.5 0 0110 8.5H6a1 1 0 00-1 1v1.128a2.251 2.251 0 11-1.5 0V5.372a2.25 2.25 0 111.5 0v1.836A2.492 2.492 0 016 7h4a1 1 0 001-1v-.628A2.25 2.25 0 019.5 3.25zM4.25 12a.75.75 0 100 1.5.75.75 0 000-1.5zM3.5 3.25a.75.75 0 111.5 0 .75.75 0 01-1.5 0z"></path> +</svg> + <span class="css-truncate-target" data-menu-button>master</span> + <span class="dropdown-caret"></span> + </summary> + + +<div class="SelectMenu"> + <div class="SelectMenu-modal"> + <header class="SelectMenu-header"> + <span class="SelectMenu-title">Switch branches/tags</span> + <button class="SelectMenu-closeButton" type="button" data-toggle-for="branch-select-menu"><svg aria-label="Close menu" aria-hidden="false" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-x"> + <path fill-rule="evenodd" d="M3.72 3.72a.75.75 0 011.06 0L8 6.94l3.22-3.22a.75.75 0 111.06 1.06L9.06 8l3.22 3.22a.75.75 0 11-1.06 1.06L8 9.06l-3.22 3.22a.75.75 0 01-1.06-1.06L6.94 8 3.72 4.78a.75.75 0 010-1.06z"></path> +</svg></button> + </header> + + <input-demux data-action="tab-container-change:input-demux#storeInput tab-container-changed:input-demux#updateInput"> + <tab-container class="d-flex flex-column js-branches-tags-tabs" style="min-height: 0;"> + <div class="SelectMenu-filter"> + <input data-target="input-demux.source" + id="context-commitish-filter-field" + class="SelectMenu-input form-control" + aria-owns="ref-list-branches" + data-controls-ref-menu-id="ref-list-branches" + autofocus + autocomplete="off" + aria-label="Filter branches/tags" + placeholder="Filter branches/tags" + type="text" + > + </div> + + <div class="SelectMenu-tabs" role="tablist" data-target="input-demux.control" > + <button class="SelectMenu-tab" type="button" role="tab" aria-selected="true">Branches</button> + <button class="SelectMenu-tab" type="button" role="tab">Tags</button> + </div> + + <div role="tabpanel" id="ref-list-branches" data-filter-placeholder="Filter branches/tags" class="d-flex flex-column flex-auto overflow-auto" tabindex=""> + <ref-selector + type="branch" + data-targets="input-demux.sinks" + data-action=" + input-entered:ref-selector#inputEntered + tab-selected:ref-selector#tabSelected + focus-list:ref-selector#focusFirstListMember + " + query-endpoint="/ablab/quast/refs" + + cache-key="v0:1635171325.05229" + current-committish="bWFzdGVy" + default-branch="bWFzdGVy" + name-with-owner="YWJsYWIvcXVhc3Q=" + prefetch-on-mouseover + > + + <template data-target="ref-selector.fetchFailedTemplate"> + <div class="SelectMenu-message" data-index="{{ index }}">Could not load branches</div> + </template> + + <template data-target="ref-selector.noMatchTemplate"> + <div class="SelectMenu-message">Nothing to show</div> +</template> + + + <!-- TODO: this max-height is necessary or else the branch list won't scroll. why? --> + <div data-target="ref-selector.listContainer" role="menu" class="SelectMenu-list " style="max-height: 330px" data-pjax="#repo-content-pjax-container"> + <div class="SelectMenu-loading pt-3 pb-0" aria-label="Menu is loading"> + <span role="status"> + <span class="sr-only">Loading</span> + <svg style="box-sizing: content-box; color: var(--color-icon-primary);" width="32" height="32" viewBox="0 0 16 16" fill="none" data-view-component="true" class="anim-rotate"> + <circle cx="8" cy="8" r="7" stroke="currentColor" stroke-opacity="0.25" stroke-width="2" vector-effect="non-scaling-stroke" /> + <path d="M15 8a7.002 7.002 0 00-7-7" stroke="currentColor" stroke-width="2" stroke-linecap="round" vector-effect="non-scaling-stroke" /> +</svg></span> + + </div> + </div> + + <template data-target="ref-selector.itemTemplate"> + <a href="https://github.com/ablab/quast/blob/{{ urlEncodedRefName }}/test_data/operons.bed" class="SelectMenu-item" role="menuitemradio" rel="nofollow" aria-checked="{{ isCurrent }}" data-index="{{ index }}"> + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-check SelectMenu-icon SelectMenu-icon--check"> + <path fill-rule="evenodd" d="M13.78 4.22a.75.75 0 010 1.06l-7.25 7.25a.75.75 0 01-1.06 0L2.22 9.28a.75.75 0 011.06-1.06L6 10.94l6.72-6.72a.75.75 0 011.06 0z"></path> +</svg> + <span class="flex-1 css-truncate css-truncate-overflow {{ isFilteringClass }}">{{ refName }}</span> + <span hidden="{{ isNotDefault }}" class="Label Label--secondary flex-self-start">default</span> + </a> +</template> + + + <footer class="SelectMenu-footer"><a href="/ablab/quast/branches">View all branches</a></footer> + </ref-selector> + + </div> + + <div role="tabpanel" id="tags-menu" data-filter-placeholder="Find a tag" class="d-flex flex-column flex-auto overflow-auto" tabindex="" hidden> + <ref-selector + type="tag" + data-action=" + input-entered:ref-selector#inputEntered + tab-selected:ref-selector#tabSelected + focus-list:ref-selector#focusFirstListMember + " + data-targets="input-demux.sinks" + query-endpoint="/ablab/quast/refs" + cache-key="v0:1635171325.05229" + current-committish="bWFzdGVy" + default-branch="bWFzdGVy" + name-with-owner="YWJsYWIvcXVhc3Q=" + > + + <template data-target="ref-selector.fetchFailedTemplate"> + <div class="SelectMenu-message" data-index="{{ index }}">Could not load tags</div> + </template> + + <template data-target="ref-selector.noMatchTemplate"> + <div class="SelectMenu-message" data-index="{{ index }}">Nothing to show</div> + </template> + + <template data-target="ref-selector.itemTemplate"> + <a href="https://github.com/ablab/quast/blob/{{ urlEncodedRefName }}/test_data/operons.bed" class="SelectMenu-item" role="menuitemradio" rel="nofollow" aria-checked="{{ isCurrent }}" data-index="{{ index }}"> + <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-check SelectMenu-icon SelectMenu-icon--check"> + <path fill-rule="evenodd" d="M13.78 4.22a.75.75 0 010 1.06l-7.25 7.25a.75.75 0 01-1.06 0L2.22 9.28a.75.75 0 011.06-1.06L6 10.94l6.72-6.72a.75.75 0 011.06 0z"></path> +</svg> + <span class="flex-1 css-truncate css-truncate-overflow {{ isFilteringClass }}">{{ refName }}</span> + <span hidden="{{ isNotDefault }}" class="Label Label--secondary flex-self-start">default</span> + </a> +</template> + + + <div data-target="ref-selector.listContainer" role="menu" class="SelectMenu-list" style="max-height: 330px" data-pjax="#repo-content-pjax-container"> + <div class="SelectMenu-loading pt-3 pb-0" aria-label="Menu is loading"> + <span role="status"> + <span class="sr-only">Loading</span> + <svg style="box-sizing: content-box; color: var(--color-icon-primary);" width="32" height="32" viewBox="0 0 16 16" fill="none" data-view-component="true" class="anim-rotate"> + <circle cx="8" cy="8" r="7" stroke="currentColor" stroke-opacity="0.25" stroke-width="2" vector-effect="non-scaling-stroke" /> + <path d="M15 8a7.002 7.002 0 00-7-7" stroke="currentColor" stroke-width="2" stroke-linecap="round" vector-effect="non-scaling-stroke" /> +</svg></span> + + </div> + </div> + <footer class="SelectMenu-footer"><a href="/ablab/quast/tags">View all tags</a></footer> + </ref-selector> + </div> + </tab-container> + </input-demux> + </div> +</div> + + </details> + +</div> + + <h2 id="blob-path" class="breadcrumb flex-auto flex-self-center min-width-0 text-normal mx-2 width-full width-md-auto flex-order-1 flex-md-order-none mt-3 mt-md-0"> + <span class="js-repo-root text-bold"><span class="js-path-segment d-inline-block wb-break-all"><a data-pjax="#repo-content-pjax-container" href="/ablab/quast"><span>quast</span></a></span></span><span class="separator">/</span><span class="js-path-segment d-inline-block wb-break-all"><a data-pjax="#repo-content-pjax-container" href="/ablab/quast/tree/master/test_data"><span>test_data</span></a></span><span class="separator">/</span><strong class="final-path">operons.bed</strong> + </h2> + <a href="/ablab/quast/find/master" + class="js-pjax-capture-input btn mr-2 d-none d-md-block" + data-pjax + data-hotkey="t"> + Go to file + </a> + + <details id="blob-more-options-details" data-view-component="true" class="details-overlay details-reset position-relative"> + <summary role="button" data-view-component="true" class="btn"> + + <svg aria-label="More options" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-kebab-horizontal"> + <path d="M8 9a1.5 1.5 0 100-3 1.5 1.5 0 000 3zM1.5 9a1.5 1.5 0 100-3 1.5 1.5 0 000 3zm13 0a1.5 1.5 0 100-3 1.5 1.5 0 000 3z"></path> +</svg> + + + +</summary> + <div data-view-component="true"> <ul class="dropdown-menu dropdown-menu-sw"> + <li class="d-block d-md-none"> + <a class="dropdown-item d-flex flex-items-baseline" data-hydro-click="{"event_type":"repository.click","payload":{"target":"FIND_FILE_BUTTON","repository_id":4779828,"originating_url":"https://github.com/ablab/quast/blob/master/test_data/operons.bed","user_id":null}}" data-hydro-click-hmac="0707bf10d56d24e04a48eff1ddaea04f77d5488781cd0529d4ea15ff48c69dbc" data-ga-click="Repository, find file, location:repo overview" data-hotkey="t" data-pjax="true" href="/ablab/quast/find/master"> + <span class="flex-auto">Go to file</span> + <span class="text-small color-fg-muted" aria-hidden="true">T</span> +</a> </li> + <li data-toggle-for="blob-more-options-details"> + <button data-toggle-for="jumpto-line-details-dialog" type="button" data-view-component="true" class="dropdown-item btn-link"> + + + <span class="d-flex flex-items-baseline"> + <span class="flex-auto">Go to line</span> + <span class="text-small color-fg-muted" aria-hidden="true">L</span> + </span> + + + +</button> </li> + <li class="dropdown-divider" role="none"></li> + <li> + <clipboard-copy data-toggle-for="blob-more-options-details" aria-label="Copy path" value="test_data/operons.bed" data-view-component="true" class="dropdown-item cursor-pointer"> + + Copy path + +</clipboard-copy> </li> + <li> + <clipboard-copy data-toggle-for="blob-more-options-details" aria-label="Copy permalink" value="https://github.com/ablab/quast/blob/06874b82b13f750cba13c8c6f283818b909c4f1b/test_data/operons.bed" data-view-component="true" class="dropdown-item cursor-pointer"> + + <span class="d-flex flex-items-baseline"> + <span class="flex-auto">Copy permalink</span> + </span> + +</clipboard-copy> </li> + </ul> +</div> +</details> </div> + + + + + <div class="Box d-flex flex-column flex-shrink-0 mb-3"> + <include-fragment src="/ablab/quast/contributors/master/test_data/operons.bed" class="commit-loader"> + <div class="Box-header d-flex flex-items-center"> + <div class="Skeleton avatar avatar-user flex-shrink-0 ml-n1 mr-n1 mt-n1 mb-n1" style="width:24px;height:24px;"></div> + <div class="Skeleton Skeleton--text col-5 ml-2"> </div> + </div> + + <div class="Box-body d-flex flex-items-center" > + <div class="Skeleton Skeleton--text col-1"> </div> + <span class="color-fg-danger h6 loader-error">Cannot retrieve contributors at this time</span> + </div> +</include-fragment> </div> + + + + + + + + + + <div data-target="readme-toc.content" class="Box mt-3 position-relative"> + + <div + class="Box-header py-2 pr-2 d-flex flex-shrink-0 flex-md-row flex-items-center" + + > + + + <div class="text-mono f6 flex-auto pr-3 flex-order-2 flex-md-order-1"> + + 2 lines (2 sloc) + <span class="file-info-divider"></span> + 81 Bytes + </div> + + <div class="d-flex py-1 py-md-0 flex-auto flex-order-1 flex-md-order-2 flex-sm-grow-0 flex-justify-between hide-sm hide-md"> + + + <div class="BtnGroup"> + <a href="/ablab/quast/raw/master/test_data/operons.bed" id="raw-url" role="button" data-view-component="true" class="btn-sm btn BtnGroup-item"> + + Raw + + +</a> + <a href="/ablab/quast/blame/master/test_data/operons.bed" data-hotkey="b" role="button" data-view-component="true" class="js-update-url-with-hash btn-sm btn BtnGroup-item"> + + Blame + + +</a> + </div> + + <div> + <a class="btn-octicon tooltipped 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