Mercurial > repos > iuc > quast
diff test-data/test2_report.html @ 9:45924fa8d8c5 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
| author | iuc |
|---|---|
| date | Mon, 08 Nov 2021 09:03:00 +0000 |
| parents | 81df4950d65b |
| children | 875d0f36d66f |
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--- a/test-data/test2_report.html Mon Feb 03 17:37:36 2020 -0500 +++ b/test-data/test2_report.html Mon Nov 08 09:03:00 2021 +0000 @@ -2651,7 +2651,7 @@ <script type="text/javascript"> var gns = { - genes: { + features: { isInitialized: false, maxY: 0, @@ -2673,7 +2673,7 @@ yAxisLabeled: false }, - draw: function (name, title, colors, filenames, data, refGenesNumber, tickX, + draw: function (name, title, colors, filenames, data, refFeaturesNumber, tickX, placeholder, legendPlaceholder, glossary, order, scalePlaceholder) { // div.html( // "<span class='plot-header'>" + kind[0].toUpperCase() + kind.slice(1) + "s covered</span>" + @@ -2695,8 +2695,8 @@ info.maxY = 0; info.maxX = 0; - if (refGenesNumber) { - info.maxY = refGenesNumber; + if (refFeaturesNumber) { + info.maxY = refFeaturesNumber; } for (var fi = 0; fi < plotsN; fi++) { @@ -2754,10 +2754,10 @@ // } // } - if (refGenesNumber) { + if (refFeaturesNumber) { info.series.push({ - data: [[0, refGenesNumber], [info.maxX, refGenesNumber]], - label: 'reference, ' + toPrettyString(refGenesNumber, 'genes'), + data: [[0, refFeaturesNumber], [info.maxX, refFeaturesNumber]], + label: 'reference, ' + toPrettyString(refFeaturesNumber, 'features'), isReference: true, dashes: { show: true, @@ -2824,7 +2824,7 @@ info.isInitialized = true; } - addLegendClickEvents(info, filenames.length, showPlotWithInfo, refGenesNumber); + addLegendClickEvents(info, filenames.length, showPlotWithInfo, refFeaturesNumber); showPlotWithInfo(info); @@ -4214,7 +4214,7 @@ var refLen = referenceValues['Reference length']; var refFragments = referenceValues['Reference fragments']; var refGC = referenceValues['Reference GC (%)']; - var refGenes = referenceValues['Reference genes']; + var refFeatures = referenceValues['Reference genomic features']; var refOperons = referenceValues['Reference operons']; var refChr = referenceValues['Reference chromosomes']; var totalReads = referenceValues['# total reads']; @@ -4233,8 +4233,8 @@ } if (refGC) $('#reference_gc').show().find('.val').html(toPrettyString(refGC)); - if (refGenes) - $('#reference_genes').show().find('.val').html(toPrettyString(refGenes)); + if (refFeatures) + $('#reference_features').show().find('.val').html(toPrettyString(refFeatures)); if (refOperons) $('#reference_operons').show().find('.val').html(toPrettyString(refOperons)); if (refChr) { @@ -4322,7 +4322,7 @@ var alignedContigsLens = null; var refLengths = null; var contigs = null; - var genesInContigs = null; + var featuresInContigs = null; var operonsInContigs = null; var gcInfos = null; @@ -4427,18 +4427,18 @@ firstPlot = false; } - genesInContigs = readJson('genes-in-contigs'); + featuresInContigs = readJson('features-in-contigs'); operonsInContigs = readJson('operons-in-contigs'); // if (genesInContigs || operonsInContigs) // contigs = readJson('contigs'); - if (genesInContigs) { - makePlot(firstPlot, assembliesNames, order, 'genes', 'Genes', gns.draw, { - filesFeatureInContigs: genesInContigs.genes_in_contigs, + if (featuresInContigs) { + makePlot(firstPlot, assembliesNames, order, 'features', 'Genomic features', gns.draw, { + filesFeatureInContigs: featuresInContigs.features_in_contigs, kind: 'gene', - filenames: genesInContigs.filenames + filenames: featuresInContigs.filenames }, - genesInContigs.ref_genes_number, tickX + featuresInContigs.ref_features_number, tickX ); firstPlot = false; } @@ -4564,8 +4564,8 @@ <span class='val'></span>% properly paired </span> - <span style="display: none;" id="reference_genes"><br> - <span class='val'></span> genes + <span style="display: none;" id="reference_features"><br> + <span class='val'></span> genomic features </span> <span style="display: none;" id="reference_operons">| @@ -4639,7 +4639,7 @@ <div class='json-code'> <div id='total-report-json'> - {"date":"03 December 2018, Monday, 23:14:03","assembliesNames":["contigs2_fna","contigs1_fna"],"referenceName":"","order":[0,1],"report":[["Genome statistics",[]],["Reads mapping",[]],["Misassemblies",[]],["Unaligned",[]],["Mismatches",[{"metricName":"# N's","quality":"Less is better","values":[0,0],"isMain":false},{"metricName":"# N's per 100 kbp","quality":"Less is better","values":["0.00","0.00"],"isMain":true}]],["Statistics without reference",[{"metricName":"# contigs","quality":"Equal","values":[1,3],"isMain":true},{"metricName":"# contigs (>= 0 bp)","quality":"Equal","values":[1,3],"isMain":false},{"metricName":"# contigs (>= 1000 bp)","quality":"Equal","values":[1,3],"isMain":false},{"metricName":"Largest contig","quality":"More is better","values":[6650,3980],"isMain":true},{"metricName":"Total length","quality":"More is better","values":[6650,6710],"isMain":true},{"metricName":"Total length (>= 0 bp)","quality":"More is better","values":[6650,6710],"isMain":false},{"metricName":"Total length (>= 1000 bp)","quality":"More is better","values":[6650,6710],"isMain":true},{"metricName":"N50","quality":"More is better","values":[6650,3980],"isMain":false},{"metricName":"N75","quality":"More is better","values":[6650,1610],"isMain":false},{"metricName":"L50","quality":"Less is better","values":[1,1],"isMain":false},{"metricName":"L75","quality":"Less is better","values":[1,2],"isMain":false},{"metricName":"GC (%)","quality":"Equal","values":["52.00","51.28"],"isMain":false}]],["K-mer-based statistics",[]],["Predicted genes",[]],["Similarity statistics",[]],["Reference statistics",[]]],"subreferences":[],"subreports":[],"minContig":500} + {"date":"07 November 2021, Sunday, 18:59:15","assembliesNames":["contig1","contig2"],"referenceName":"dataset_7567d03a_76ca_49a4_aaa2_334a7b5a8f74","order":[0,1],"report":[["Genome statistics",[{"metricName":"Genome fraction (%)","quality":"More is better","values":["71.579","100.000"],"isMain":true},{"metricName":"Duplication ratio","quality":"Less is better","values":["1.000","1.000"],"isMain":true},{"metricName":"# genomic features","quality":"More is better","values":["7 + 7 part","13 + 1 part"],"isMain":true},{"metricName":"Largest alignment","quality":"More is better","values":[2030,6650],"isMain":true},{"metricName":"Total aligned length","quality":"More is better","values":[4760,6650],"isMain":true},{"metricName":"NG50","quality":"More is better","values":[3980,6650],"isMain":false},{"metricName":"NG75","quality":"More is better","values":[1610,6650],"isMain":false},{"metricName":"NA50","quality":"More is better","values":[1610,6650],"isMain":false},{"metricName":"NA75","quality":"More is better","values":[null,6650],"isMain":false},{"metricName":"NGA50","quality":"More is better","values":[1610,6650],"isMain":true},{"metricName":"NGA75","quality":"More is better","values":[null,6650],"isMain":false},{"metricName":"LG50","quality":"Less is better","values":[1,1],"isMain":false},{"metricName":"LG75","quality":"Less is better","values":[2,1],"isMain":false},{"metricName":"LA50","quality":"Less is better","values":[2,1],"isMain":false},{"metricName":"LA75","quality":"Less is better","values":[null,1],"isMain":false},{"metricName":"LGA50","quality":"Less is better","values":[2,1],"isMain":true},{"metricName":"LGA75","quality":"Less is better","values":[null,1],"isMain":false}]],["Reads mapping",[]],["Misassemblies",[{"metricName":"# misassemblies","quality":"Less is better","values":[0,0],"isMain":true},{"metricName":" # relocations","quality":"Less is better","values":[0,0],"isMain":false},{"metricName":" # translocations","quality":"Less is better","values":[0,0],"isMain":false},{"metricName":" # inversions","quality":"Less is better","values":[0,0],"isMain":false},{"metricName":"# misassembled contigs","quality":"Less is better","values":[0,0],"isMain":false},{"metricName":"Misassembled contigs length","quality":"Less is better","values":[0,0],"isMain":true},{"metricName":"# local misassemblies","quality":"Less is better","values":[0,0],"isMain":false},{"metricName":"# scaffold gap ext. mis.","quality":"Less is better","values":[0,0],"isMain":false},{"metricName":"# scaffold gap loc. mis.","quality":"Less is better","values":[0,0],"isMain":false},{"metricName":"# unaligned mis. contigs","quality":"Less is better","values":[0,0],"isMain":false}]],["Unaligned",[{"metricName":"# fully unaligned contigs","quality":"Less is better","values":[0,0],"isMain":false},{"metricName":"Fully unaligned length","quality":"Less is better","values":[0,0],"isMain":false},{"metricName":"# partially unaligned contigs","quality":"Less is better","values":[1,0],"isMain":false},{"metricName":"Partially unaligned length","quality":"Less is better","values":[1950,0],"isMain":false}]],["Mismatches",[{"metricName":"# mismatches","quality":"Less is better","values":[0,0],"isMain":false},{"metricName":"# indels","quality":"Less is better","values":[0,0],"isMain":false},{"metricName":"Indels length","quality":"Less is better","values":[0,0],"isMain":false},{"metricName":"# mismatches per 100 kbp","quality":"Less is better","values":["0.00","0.00"],"isMain":true},{"metricName":"# indels per 100 kbp","quality":"Less is better","values":["0.00","0.00"],"isMain":true},{"metricName":" # indels (<= 5 bp)","quality":"Less is better","values":[0,0],"isMain":false},{"metricName":" # indels (> 5 bp)","quality":"Less is better","values":[0,0],"isMain":false},{"metricName":"# N's","quality":"Less is better","values":[0,0],"isMain":false},{"metricName":"# N's per 100 kbp","quality":"Less is better","values":["0.00","0.00"],"isMain":true}]],["Statistics without reference",[{"metricName":"# contigs","quality":"Equal","values":[3,1],"isMain":true},{"metricName":"# contigs (>= 0 bp)","quality":"Equal","values":[3,1],"isMain":false},{"metricName":"# contigs (>= 1000 bp)","quality":"Equal","values":[3,1],"isMain":false},{"metricName":"Largest contig","quality":"More is better","values":[3980,6650],"isMain":true},{"metricName":"Total length","quality":"More is better","values":[6710,6650],"isMain":true},{"metricName":"Total length (>= 0 bp)","quality":"More is better","values":[6710,6650],"isMain":false},{"metricName":"Total length (>= 1000 bp)","quality":"More is better","values":[6710,6650],"isMain":true},{"metricName":"N50","quality":"More is better","values":[3980,6650],"isMain":false},{"metricName":"N75","quality":"More is better","values":[1610,6650],"isMain":false},{"metricName":"L50","quality":"Less is better","values":[1,1],"isMain":false},{"metricName":"L75","quality":"Less is better","values":[2,1],"isMain":false},{"metricName":"GC (%)","quality":"Equal","values":["51.28","52.00"],"isMain":false}]],["K-mer-based statistics",[{"metricName":"K-mer-based compl. (%)","quality":"More is better","values":["68.09","100.00"],"isMain":true},{"metricName":"K-mer-based cor. length (%)","quality":"More is better","values":["100.00","100.00"],"isMain":false},{"metricName":"K-mer-based mis. length (%)","quality":"Less is better","values":["0.00","0.00"],"isMain":false},{"metricName":"K-mer-based undef. length (%)","quality":"Less is better","values":["0.00","0.00"],"isMain":false},{"metricName":"# k-mer-based misjoins","quality":"Less is better","values":[0,0],"isMain":true},{"metricName":" # k-mer-based translocations","quality":"Equal","values":[0,0],"isMain":false},{"metricName":" # k-mer-based 100kbp relocations","quality":"Equal","values":[0,0],"isMain":false}]],["Predicted genes",[]],["Similarity statistics",[{"metricName":"# similar correct contigs","quality":"Equal","values":[0,0],"isMain":false},{"metricName":"# similar misassembled blocks","quality":"Equal","values":[0,0],"isMain":false}]],["Reference statistics",[{"metricName":"Reference length","quality":"Equal","values":[6650,6650],"isMain":false},{"metricName":"Reference fragments","quality":"Equal","values":[1,1],"isMain":false},{"metricName":"Reference GC (%)","quality":"Equal","values":["52.00","52.00"],"isMain":false},{"metricName":"Reference genomic features","quality":"Equal","values":[14,14],"isMain":false},{"metricName":"Reference operons","quality":"Equal","values":[0,0],"isMain":false}]]],"subreferences":[],"subreports":[],"minContig":500} </div> <div id='qualities-json'> {{ qualities }} @@ -4649,34 +4649,34 @@ </div> <div id="contigs-lengths-json"> - {"filenames":["contigs2_fna","contigs1_fna"],"lists_of_lengths":[[6650],[3980,1610,1120]]} + {"filenames":["contig1","contig2"],"lists_of_lengths":[[3980,1610,1120],[6650]]} </div> <div id='assemblies-lengths-json'> - {{ assembliesLengths }} + {"filenames":["contig1","contig2"],"assemblies_lengths":[6710,6650]} </div> <div id='reference-length-json'> - {{ referenceLength }} + {"reflen":[6650]} </div> <div id='tick-x-json'> {"tickX":1} </div> <div id='coord-nx-json'> - {"coord_x":[[0.0,1e-10,100.0,100.0000000001],[0.0,1e-10,59.31445603576751,59.314456035867515,83.30849478390462,83.30849478400462,100.0,100.0000000001]],"coord_y":[[6650,6650,6650,0.0],[3980,3980,3980,1610,1610,1120,1120,0.0]],"filenames":["contigs2_fna","contigs1_fna"]} + {"coord_x":[[0.0,1e-10,59.31445603576751,59.314456035867515,83.30849478390462,83.30849478400462,100.0,100.0000000001],[0.0,1e-10,100.0,100.0000000001]],"coord_y":[[3980,3980,3980,1610,1610,1120,1120,0.0],[6650,6650,6650,0.0]],"filenames":["contig1","contig2"]} </div> <div id='coord-ngx-json'> - {{ coordNGx }} + {"coord_x":[[0.0,1e-10,59.849624060150376,59.84962406025038,84.06015037593986,84.06015037603986,100.90225563909775,100.90225563919775],[0.0,1e-10,100.0,100.0000000001]],"coord_y":[[3980,3980,3980,1610,1610,1120,1120,0.0],[6650,6650,6650,0.0]],"filenames":["contig1","contig2"]} </div> <div id='coord-nax-json'> - {{ coordNAx }} + {"coord_x":[[0.0,1e-10,30.253353204172875,30.253353204272873,54.24739195230998,54.247391952409984,70.93889716840536,70.93889716850536],[0.0,1e-10,100.0,100.0000000001]],"coord_y":[[2030,2030,2030,1610,1610,1120,1120,0.0],[6650,6650,6650,0.0]],"filenames":["contig1","contig2"]} </div> <div id='coord-ngax-json'> - {{ coordNGAx }} + {"coord_x":[[0.0,1e-10,30.526315789473685,30.526315789573683,54.73684210526316,54.73684210536316,71.57894736842105,71.57894736852106],[0.0,1e-10,100.0,100.0000000001]],"coord_y":[[2030,2030,2030,1610,1610,1120,1120,0.0],[6650,6650,6650,0.0]],"filenames":["contig1","contig2"]} </div> <div id='coord-misassemblies-json'> - {{ coordmisassemblies }} + {"coord_x":[[0,1],[0,1]],"coord_y":[[71.57894736842105,71.57894736842105],[100.0,100.0]],"filenames":["contig1","contig2"]} </div> - <div id='genes-in-contigs-json'> - {{ genesInContigs }} + <div id='features-in-contigs-json'> + {"filenames":["contig1","contig2"],"features_in_contigs":{"contig1":[5,0,2],"contig2":[13]},"ref_features_number":14} </div> <div id='operons-in-contigs-json'> {{ operonsInContigs }} @@ -4701,10 +4701,10 @@ {{ krona }} </div> <div id='gc-json'> - {"filenames":["contigs2_fna","contigs1_fna"],"reference_index":null,"list_of_GC_distributions":[[[0.0,1.0,2.0,3.0,4.0,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,61.0,62.0,63.0,64.0,65.0,66.0,67.0,68.0,69.0,70.0,71.0,72.0,73.0,74.0,75.0,76.0,77.0,78.0,79.0,80.0,81.0,82.0,83.0,84.0,85.0,86.0,87.0,88.0,89.0,90.0,91.0,92.0,93.0,94.0,95.0,96.0,97.0,98.0,99.0,100.0],[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,0,0,0,3,2,1,0,0,5,3,4,4,7,3,5,2,4,7,0,10,1,1,2,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]],[[0.0,1.0,2.0,3.0,4.0,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,61.0,62.0,63.0,64.0,65.0,66.0,67.0,68.0,69.0,70.0,71.0,72.0,73.0,74.0,75.0,76.0,77.0,78.0,79.0,80.0,81.0,82.0,83.0,84.0,85.0,86.0,87.0,88.0,89.0,90.0,91.0,92.0,93.0,94.0,95.0,96.0,97.0,98.0,99.0,100.0],[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,1,0,0,3,1,0,1,2,1,5,5,5,2,5,4,4,7,1,6,2,5,1,0,1,1,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]]],"list_of_GC_contigs_distributions":[[[0,5,10,15,20,25,30,35,40,45,50,55,60,65,70,75,80,85,90,95,100],[0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0]],[[0,5,10,15,20,25,30,35,40,45,50,55,60,65,70,75,80,85,90,95,100],[0,0,0,0,0,0,0,0,0,0,3,0,0,0,0,0,0,0,0,0,0]]],"lists_of_gc_info":null} + {"filenames":["contig1","contig2"],"reference_index":2,"list_of_GC_distributions":[[[0.0,1.0,2.0,3.0,4.0,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,61.0,62.0,63.0,64.0,65.0,66.0,67.0,68.0,69.0,70.0,71.0,72.0,73.0,74.0,75.0,76.0,77.0,78.0,79.0,80.0,81.0,82.0,83.0,84.0,85.0,86.0,87.0,88.0,89.0,90.0,91.0,92.0,93.0,94.0,95.0,96.0,97.0,98.0,99.0,100.0],[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,1,0,0,3,1,0,1,2,1,5,5,5,2,5,4,4,7,1,6,2,5,1,0,1,1,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]],[[0.0,1.0,2.0,3.0,4.0,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,61.0,62.0,63.0,64.0,65.0,66.0,67.0,68.0,69.0,70.0,71.0,72.0,73.0,74.0,75.0,76.0,77.0,78.0,79.0,80.0,81.0,82.0,83.0,84.0,85.0,86.0,87.0,88.0,89.0,90.0,91.0,92.0,93.0,94.0,95.0,96.0,97.0,98.0,99.0,100.0],[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,0,0,0,3,2,1,0,0,5,3,4,4,7,3,5,2,4,7,0,10,1,1,2,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]],[[0.0,1.0,2.0,3.0,4.0,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,61.0,62.0,63.0,64.0,65.0,66.0,67.0,68.0,69.0,70.0,71.0,72.0,73.0,74.0,75.0,76.0,77.0,78.0,79.0,80.0,81.0,82.0,83.0,84.0,85.0,86.0,87.0,88.0,89.0,90.0,91.0,92.0,93.0,94.0,95.0,96.0,97.0,98.0,99.0,100.0],[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,0,0,0,3,2,1,0,0,5,3,4,4,7,3,5,2,4,7,0,10,1,1,2,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]]],"list_of_GC_contigs_distributions":[[[0,5,10,15,20,25,30,35,40,45,50,55,60,65,70,75,80,85,90,95,100],[0,0,0,0,0,0,0,0,0,0,3,0,0,0,0,0,0,0,0,0,0]],[[0,5,10,15,20,25,30,35,40,45,50,55,60,65,70,75,80,85,90,95,100],[0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0]]],"lists_of_gc_info":null} </div> <div id='icarus-json'> - {"links":["icarus_viewers/contig_size_viewer.html"],"links_names":["View in Icarus contig browser"]} + {"links":["icarus_viewers/alignment_viewer.html"],"links_names":["View in Icarus contig browser"]} </div> </div> </div> @@ -4789,6 +4789,9 @@ "# predicted genes (unique)" : "<span>is the number of unique genes in the assembly found by a gene prediction tool.</span>", "# predicted genes (>= 0 bp)" : "<span>is the number of found genes having length greater than or equal to 0 bp.</span>", + "Complete BUSCO (%)" : "<span>is the percent of BUSCO (Universal Single-Copy Ortholog) genes found in the assembly in a complete form.</span>", + "Partial BUSCO (%)" : "<span>is the percent of BUSCO (Universal Single-Copy Ortholog) genes found in the assembly in a partial form.</span>", + "Cumulative length" : "<span>plot shows the growth of assembly contig lengths. On the x-axis, contigs are ordered from largest (contig #1) to smallest. The y-axis gives the size of the x largest contigs in the assembly.</span>", "Nx" : "<span>plot shows the Nx metric value as x varies from 0 to 100.</span> <span>Nx is the minimum contig length <b>y</b> such that using contigs of length at least <b>y</b> accounts for at least x% of the total assembly length.</span>", "NGx" : "<span>plot shows the NGx metric value as x varies from 0 to 100.</span> <span>NGx is the minimum contig length <b>y</b> such that using contigs of length at least <b>y</b> accounts for at least x% of the bases of the reference genome. This metric is computed only if a reference genome is provided.</span>",