Mercurial > repos > iuc > quast
diff quast.xml @ 12:875d0f36d66f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit f713a7853d074ca39057c680ebadba5cbecf5d86"
author | iuc |
---|---|
date | Sun, 06 Feb 2022 21:02:38 +0000 |
parents | 7594365c546b |
children | 675488238c96 |
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--- a/quast.xml Sat Nov 27 09:45:20 2021 +0000 +++ b/quast.xml Sun Feb 06 21:02:38 2022 +0000 @@ -190,29 +190,29 @@ <when value="disabled"/> <when value="single"> - <param name="input_1" format="fastq,fastq.gz" type="data" multiple="true" label="FASTQ file" /> + <param name="input_1" format="fastq,fastq.gz,fasta,fasta.gz" type="data" multiple="true" label="FASTQ/FASTA file" /> </when> <when value="paired"> - <param name="input_1" format="fastq,fastq.gz" type="data" multiple="true" label="FASTQ file #1" /> - <param name="input_2" format="fastq,fastq.gz" type="data" multiple="true" label="FASTQ file #2" /> + <param name="input_1" format="fastq,fastq.gz,fasta,fasta.gz" type="data" multiple="true" label="FASTQ/FASTA file #1" /> + <param name="input_2" format="fastq,fastq.gz,fasta,fasta.gz" type="data" multiple="true" label="FASTQ/FASTA file #2" /> </when> <when value="paired_interlaced"> - <param name="input_1" format="fastq,fastq.gz" type="data" multiple="true" label="FASTQ file" /> + <param name="input_1" format="fastq,fastq.gz,fasta,fasta.gz" type="data" multiple="true" label="FASTQ/FASTA file" /> </when> <when value="mate_paired"> - <param name="input_1" format="fastq,fastq.gz" type="data" multiple="true" label="FASTQ file #1" /> - <param name="input_2" format="fastq,fastq.gz" type="data" multiple="true" label="FASTQ file #2" /> + <param name="input_1" format="fastq,fastq.gz,fasta,fasta.gz" type="data" multiple="true" label="FASTQ/FASTA file #1" /> + <param name="input_2" format="fastq,fastq.gz,fasta,fasta.gz" type="data" multiple="true" label="FASTQ/FASTA file #2" /> </when> <when value="pacbio"> - <param name="input_1" format="fastq,fastq.gz" type="data" multiple="true" label="FASTQ file" /> + <param name="input_1" format="fastq,fastq.gz,fasta,fasta.gz" type="data" multiple="true" label="FASTQ/FASTA file" /> </when> <when value="nanopore"> - <param name="input_1" format="fastq,fastq.gz" type="data" multiple="true" label="FASTQ file" /> + <param name="input_1" format="fastq,fastq.gz,fasta,fasta.gz" type="data" multiple="true" label="FASTQ/FASTA file" /> </when> </conditional> @@ -413,7 +413,7 @@ </section> <param name="output_files" value="html"/> <output name="report_html" file="test1_report.html" ftype="html" compare="sim_size"/> - <output name="circos_output" file="test1_circos.png" ftype="png"/> + <output name="circos_output" file="test1_circos.png" ftype="png" compare="sim_size"/> </test> <!-- Test 02: all outputs --> <test expect_num_outputs="8"> @@ -590,6 +590,26 @@ <param name="output_files" value="tabular"/> <output name="quast_tabular" file="test6.tab" ftype="tabular"/> </test> + <!-- Test 7: FASTA.gz read files --> + <test expect_num_outputs="1"> + <conditional name="in"> + <param name="custom" value="true"/> + <repeat name="inputs"> + <param name="input" value="contigs1.fna"/> + <param name="labels" value="contig1"/> + </repeat> + <repeat name="inputs"> + <param name="input" value="contigs2.fna"/> + <param name="labels" value="contig2"/> + </repeat> + </conditional> + <conditional name="reads"> + <param name="reads_option" value="single"/> + <param name="input_1" value="pacbio_01.fasta.gz,pacbio_02.fasta.gz"/> + </conditional> + <param name="output_files" value="tabular"/> + <output name="quast_tabular" file="test7.tab" ftype="tabular"/> + </test> </tests> <help> <![CDATA[