Mercurial > repos > iuc > quast
view test-data/test10_tabular_report.tab @ 14:3061c8b029e5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
| author | iuc |
|---|---|
| date | Fri, 05 Aug 2022 15:21:27 +0000 |
| parents | |
| children |
line wrap: on
line source
Assembly contig1 contig2 # contigs (>= 0 bp) 3 1 # contigs (>= 1000 bp) 3 1 Total length (>= 0 bp) 6710 6650 Total length (>= 1000 bp) 6710 6650 # contigs 3 1 Largest contig 3980 6650 Total length 6710 6650 Reference length - - Estimated reference length - - GC (%) 51.28 52.00 Reference GC (%) - - N50 3980 6650 NG50 - - N80 1610 6650 NG80 - - auN 2934.0 6650.0 auNG - - L50 1 1 LG50 - - L80 2 1 LG80 - - # total reads - - # left - - # right - - Mapped (%) - - Reference mapped (%) - - Properly paired (%) - - Reference properly paired (%) - - Avg. coverage depth - - Reference avg. coverage depth - - Coverage >= 1x (%) - - Reference coverage >= 1x (%) - - # large blocks misassemblies - - # misassemblies - - # misassembled contigs - - Misassembled contigs length - - # local misassemblies - - # scaffold gap ext. mis. - - # scaffold gap loc. mis. - - # structural variations - - # possible TEs - - # unaligned mis. contigs - - # unaligned contigs - - Unaligned length - - Genome fraction (%) - - Duplication ratio - - Avg contig read support - - # N's per 100 kbp 0.00 0.00 # mismatches per 100 kbp - - # indels per 100 kbp - - # genomic features - - # operons - - Complete BUSCO (%) - - Partial BUSCO (%) - - # predicted genes (unique) - - # predicted genes (>= 0 bp) - - # predicted genes (>= 300 bp) - - # predicted genes (>= 1500 bp) - - # predicted genes (>= 3000 bp) - - # predicted rRNA genes - - Largest alignment - - Total aligned length - - NA50 - - NGA50 - - NA80 - - NGA80 - - auNA - - auNGA - - LA50 - - LGA50 - - LA80 - - LGA80 - - K-mer-based compl. (%) - - K-mer-based cor. length (%) - - K-mer-based mis. length (%) - - # k-mer-based misjoins - -