Mercurial > repos > iuc > quast
view test-data/test1_output.tsv @ 5:81df4950d65b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 600e99f5044018f7d0046b1bfdc6dc392c4e6baa
| author | iuc |
|---|---|
| date | Tue, 04 Dec 2018 06:49:05 -0500 |
| parents | 0834c823d4b9 |
| children |
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Assembly contigs2_fna contigs1_fna # contigs (>= 0 bp) 1 3 # contigs (>= 1000 bp) 1 3 Total length (>= 0 bp) 6650 6710 Total length (>= 1000 bp) 6650 6710 # contigs 1 3 Largest contig 6650 3980 Total length 6650 6710 Reference length 6650 6650 GC (%) 52.00 51.28 Reference GC (%) 52.00 52.00 N50 6650 3980 NG50 6650 3980 N75 6650 1610 NG75 6650 1610 L50 1 1 LG50 1 1 L75 1 2 LG75 1 2 # misassemblies 0 0 # misassembled contigs 0 0 Misassembled contigs length 0 0 # local misassemblies 0 0 # scaffold gap ext. mis. 0 0 # scaffold gap loc. mis. 0 0 # possible TEs 0 0 # unaligned mis. contigs 0 0 # unaligned contigs 0 + 0 part 0 + 1 part Unaligned length 0 1950 Genome fraction (%) 100.000 71.579 Duplication ratio 1.000 1.000 # N's per 100 kbp 0.00 0.00 # mismatches per 100 kbp 0.00 0.00 # indels per 100 kbp 0.00 0.00 # genomic features 13 + 1 part 7 + 7 part Largest alignment 6650 2030 Total aligned length 6650 4760 NA50 6650 1610 NGA50 6650 1610 NA75 6650 - NGA75 6650 - LA50 1 2 LGA50 1 2 LA75 1 - LGA75 1 -