Mercurial > repos > iuc > quast
view test-data/test1.tabular @ 8:ebb0dcdb621a draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit e24f6cb40f19bad167b440e119e0300f15e04a78"
| author | iuc |
|---|---|
| date | Mon, 03 Feb 2020 17:37:36 -0500 |
| parents | f30d03867854 |
| children |
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Assembly contig1 contigs2_fna # contigs (>= 0 bp) 3 1 # contigs (>= 1000 bp) 3 1 Total length (>= 0 bp) 6710 6650 Total length (>= 1000 bp) 6710 6650 # contigs 3 1 Largest contig 3980 6650 Total length 6710 6650 Reference length 6650 6650 GC (%) 51.28 52.00 Reference GC (%) 52.00 52.00 N50 3980 6650 NG50 3980 6650 N75 1610 6650 NG75 1610 6650 L50 1 1 LG50 1 1 L75 2 1 LG75 2 1 # misassemblies 0 0 # misassembled contigs 0 0 Misassembled contigs length 0 0 # local misassemblies 0 0 # scaffold gap ext. mis. 0 0 # scaffold gap loc. mis. 0 0 # possible TEs 0 0 # unaligned mis. contigs 0 0 # unaligned contigs 0 + 1 part 0 + 0 part Unaligned length 1950 0 Genome fraction (%) 71.579 100.000 Duplication ratio 1.000 1.000 # N's per 100 kbp 0.00 0.00 # mismatches per 100 kbp 0.00 0.00 # indels per 100 kbp 0.00 0.00 # genomic features 7 + 7 part 13 + 1 part # predicted rRNA genes 0 + 0 part 0 + 0 part Largest alignment 2030 6650 Total aligned length 4760 6650 NA50 1610 6650 NGA50 1610 6650 NA75 - 6650 NGA75 - 6650 LA50 2 1 LGA50 2 1 LA75 - 1 LGA75 - 1 K-mer-based compl. (%) 68.09 100.00 K-mer-based cor. length (%) 100.00 100.00 K-mer-based mis. length (%) 0.00 0.00 # k-mer-based misjoins 0 0