Mercurial > repos > iuc > query_tabular
annotate query_tabular.xml @ 0:3708ff0198b7 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
author | iuc |
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date | Tue, 18 Jul 2017 09:07:07 -0400 |
parents | |
children | 8a33b442ecd9 |
rev | line source |
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0
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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changeset
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1 <tool id="query_tabular" name="Query Tabular" version="1.0.0"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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2 <description>using sqlite sql</description> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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3 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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4 <macros> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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changeset
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5 <import>macros.xml</import> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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6 </macros> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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7 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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8 <requirements> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
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9 </requirements> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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10 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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changeset
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11 <command detect_errors="exit_code"><![CDATA[ |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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12 cat '$query_file' && |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
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13 #if $add_to_database.withdb: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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14 #if $save_db: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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15 cp '$add_to_database.withdb' '$sqlitedb' && |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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16 #else: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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17 cp '$add_to_database.withdb' '$workdb' && |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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18 #end if |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
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19 #end if |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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20 python '$__tool_directory__/query_tabular.py' |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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21 #if $save_db |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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22 -s '$sqlitedb' |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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changeset
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23 #else |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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24 -s '$workdb' |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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25 #end if |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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26 -j '$table_json' |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
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27 #if $sqlquery: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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28 -Q '$query_file' |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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29 $no_header |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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30 -o '$output' |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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31 #end if |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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32 ]]></command> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
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33 <configfiles> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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34 <configfile name="query_file"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
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35 $sqlquery |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
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36 </configfile> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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37 <configfile name="table_json"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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38 #import json |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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39 #set $jtbldef = dict() |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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40 #set $jtbls = [] |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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41 #set $jtbldef['tables'] = $jtbls |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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42 #for $i,$tbl in enumerate($tables): |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
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43 #set $jtbl = dict() |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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44 #set $jtbl['file_path'] = str($tbl.table) |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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45 #if $tbl.tbl_opts.table_name: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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46 #set $tname = str($tbl.tbl_opts.table_name) |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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47 #else |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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48 #set $tname = 't' + str($i + 1) |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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49 #end if |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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50 #set $jtbl['table_name'] = $tname |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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51 ## #if $tbl.tbl_opts.sel_cols: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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52 ## #set $jtbl['sel_cols'] = $tbl.tbl_opts.sel_cols el_cols |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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53 ## #end if |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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54 #if $tbl.tbl_opts.pkey_autoincr: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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55 #set $jtbl['pkey_autoincr'] = str($tbl.tbl_opts.pkey_autoincr) |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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56 #end if |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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57 #if $tbl.tbl_opts.col_names: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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58 #set $col_names = str($tbl.tbl_opts.col_names) |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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59 #if $tbl.tbl_opts.load_named_columns: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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60 #set $jtbl['load_named_columns'] = True |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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61 #end if |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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62 #else |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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63 #set $col_names = '' |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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64 #end if |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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65 #set $jtbl['column_names'] = $col_names |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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66 #set $idx_unique = [] |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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67 #set $idx_non = [] |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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68 #for $idx in $tbl.tbl_opts.indexes: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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69 #if $idx.unique: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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70 #silent $idx_unique.append(str($idx.index_columns)) |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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71 #else: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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72 #silent $idx_non.append(str($idx.index_columns)) |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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73 #end if |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
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74 #end for |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
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75 #if len($idx_unique) > 0: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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76 #set $jtbl['unique'] = $idx_unique |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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77 #end if |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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78 #if len($idx_non) > 0: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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79 #set $jtbl['index'] = $idx_non |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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80 #end if |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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81 #set $linefilters = $tbl.input_opts.linefilters |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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82 @LINEFILTERS@ |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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83 #if $input_filters: |
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84 #set $jtbl['filters'] = $input_filters |
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85 #end if |
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86 #set $jtbls += [$jtbl] |
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87 #end for |
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88 #echo $json.dumps($jtbldef) |
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89 </configfile> |
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90 </configfiles> |
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91 <inputs> |
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92 <param name="workdb" type="hidden" value="workdb.sqlite" label=""/> |
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93 <section name="add_to_database" expanded="false" title="Add tables to an existing database"> |
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94 <param name="withdb" type="data" format="sqlite" optional="true" label="Add tables to this Database" |
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95 help="Make sure your added table names are not already in this database"/> |
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96 </section> |
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97 <repeat name="tables" title="Database Table" min="0"> |
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98 <param name="table" type="data" format="tabular" label="Tabular Dataset for Table"/> |
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99 <section name="input_opts" expanded="false" title="Filter Dataset Input"> |
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100 <expand macro="macro_line_filters" /> |
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101 </section> |
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102 <section name="tbl_opts" expanded="false" title="Table Options"> |
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103 <param name="table_name" type="text" value="" optional="true" label="Specify Name for Table"> |
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104 <help>By default, tables will be named: t1,t2,...,tn (table names must be unique)</help> |
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105 <validator type="regex" message="Table name should start with a letter and may contain additional letters, digits, and underscores">^[A-Za-z]\w*$</validator> |
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106 </param> |
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107 <param name="col_names" type="text" value="" optional="true" label="Specify Column Names (comma-separated list)"> |
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108 <help>By default, table columns will be named: c1,c2,c3,...,cn (column names for a table must be unique) |
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109 You can override the default names by entering a comma -separated list of names, e.g. ',name1,,,name2' would rename the second and fifth columns. |
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110 </help> |
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111 <sanitizer sanitize="False"/> |
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112 <validator type="regex" message="A List of names separated by commas: Column names should start with a letter and may contain additional letters, digits, and underscores. Otherwise, the name must be eclosed in: double quotes, back quotes, or square brackets.">^([A-Za-z]\w*|"\S+[^,"]*"|`\S+[^,`]*`|[[]\S+[^,"]*[]])?(,([A-Za-z]\w*|"\S+.*"|`\S+[^,`]*`|[[]\S+[^,"]*[]])?)*$</validator> |
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113 </param> |
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114 <param name="load_named_columns" type="boolean" truevalue="load_named_columns" falsevalue="" checked="false" label="Only load the columns you have named into database"/> |
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115 <param name="pkey_autoincr" type="text" value="" optional="true" label="Add an auto increment primary key column with this name" |
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116 help="Only creates this additional column when a name is entered. (This can not be the same name as any of the other columns in this table.)"> |
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117 <validator type="regex" message="Column name">^([A-Za-z]\w*)?$</validator> |
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118 </param> |
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119 <repeat name="indexes" title="Table Index"> |
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120 <param name="unique" type="boolean" truevalue="yes" falsevalue="no" checked="False" label="This is a unique index"/> |
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121 <param name="index_columns" type="text" value="" label="Index on Columns"> |
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122 <help>Create an index on the column names: e,g, c1 or c2,c4</help> |
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123 <validator type="regex" message="Column name, separated by commes if more than one">^([A-Za-z]\w*|"\S+[^,"]*"|`\S+[^,`]*`|[[]\S+[^,"]*[]])(,([A-Za-z]\w*|"\S+.*"|`\S+[^,`]*`|[[]\S+[^,"]*[]])?)*$</validator> |
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124 </param> |
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125 </repeat> |
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126 </section> |
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127 </repeat> |
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128 <param name="save_db" type="boolean" truevalue="yes" falsevalue="no" checked="false" label="Save the sqlite database in your history" |
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129 help="SQLite to tabular tool can run additional queries on this database"/> |
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130 <param name="sqlquery" type="text" area="true" size="20x80" value="" optional="true" label="SQL Query to generate tabular output"> |
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131 <help>By default: tables are named: t1,t2,...,tn and columns in each table: c1,c2,...,cn</help> |
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132 <sanitizer sanitize="False"/> |
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133 <validator type="regex" message="">^(?ims)\s*select\s+.*\s+from\s+.*$</validator> |
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134 </param> |
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135 <param name="no_header" type="boolean" truevalue="-n" falsevalue="" checked="False" label="Omit column headers from tabular output"/> |
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136 </inputs> |
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137 <outputs> |
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138 <data format="sqlite" name="sqlitedb" label="sqlite db of ${on_string}"> |
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139 <filter>save_db</filter> |
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140 </data> |
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141 <data format="tabular" name="output" label="query results on ${on_string}"> |
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142 <filter>not save_db or (sqlquery and len(sqlquery.strip()) > 0)</filter> |
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143 </data> |
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144 </outputs> |
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145 <tests> |
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146 <test> |
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147 <repeat name="tables"> |
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148 <param name="table" ftype="tabular" value="customers.tsv"/> |
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149 <section name="input_opts"> |
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150 <repeat name="linefilters"> |
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151 <conditional name="filter"> |
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152 <param name="filter_type" value="comment"/> |
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153 <param name="comment_char" value="35"/> |
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154 </conditional> |
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155 </repeat> |
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156 </section> |
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157 <section name="tbl_opts"> |
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158 <param name="table_name" value="customers"/> |
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159 <param name="col_names" value="CustomerID,FirstName,LastName,Email,DOB,Phone"/> |
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160 </section> |
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161 </repeat> |
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162 <repeat name="tables"> |
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163 <param name="table" ftype="tabular" value="sales.tsv"/> |
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164 <section name="input_opts"> |
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165 <repeat name="linefilters"> |
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166 <conditional name="filter"> |
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167 <param name="filter_type" value="comment"/> |
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168 <param name="comment_char" value="35"/> |
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169 </conditional> |
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170 </repeat> |
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171 </section> |
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172 <section name="tbl_opts"> |
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173 <param name="table_name" value="sales"/> |
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174 <param name="col_names" value="CustomerID,Date,SaleAmount"/> |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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175 </section> |
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176 </repeat> |
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177 <param name="sqlquery" value="SELECT FirstName,LastName,sum(SaleAmount) as "TotalSales" FROM customers join sales on customers.CustomerID = sales.CustomerID GROUP BY customers.CustomerID ORDER BY TotalSales DESC"/> |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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178 <output name="output" file="sales_results.tsv"/> |
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179 </test> |
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180 |
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181 <test> |
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182 <repeat name="tables"> |
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183 <param name="table" ftype="tabular" value="customers.tsv"/> |
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184 <section name="input_opts"> |
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185 <repeat name="linefilters"> |
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186 <conditional name="filter"> |
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187 <param name="filter_type" value="comment"/> |
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188 <param name="comment_char" value="35"/> |
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189 </conditional> |
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190 </repeat> |
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191 </section> |
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192 <section name="tbl_opts"> |
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193 <param name="col_names" value=",FirstName,LastName,,DOB,"/> |
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194 </section> |
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195 </repeat> |
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196 <repeat name="tables"> |
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197 <param name="table" ftype="tabular" value="sales.tsv"/> |
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198 <section name="input_opts"> |
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199 <repeat name="linefilters"> |
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200 <conditional name="filter"> |
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201 <param name="filter_type" value="skip"/> |
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202 <param name="skip_lines" value="1"/> |
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203 </conditional> |
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204 </repeat> |
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205 </section> |
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206 </repeat> |
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207 <param name="sqlquery" value="SELECT FirstName,LastName,sum(t2.c3) as "TotalSales" FROM t1 join t2 on t1.c1 = t2.c1 GROUP BY t1.c1 ORDER BY TotalSales DESC;"/> |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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208 <output name="output" file="sales_results.tsv"/> |
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209 </test> |
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210 |
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211 <test> |
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212 <repeat name="tables"> |
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213 <param name="table" ftype="tabular" value="customers.tsv"/> |
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214 <section name="input_opts"> |
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215 <repeat name="linefilters"> |
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216 <conditional name="filter"> |
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217 <param name="filter_type" value="skip"/> |
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218 <param name="skip_lines" value="1"/> |
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219 </conditional> |
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220 </repeat> |
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221 </section> |
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222 <section name="tbl_opts"> |
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223 <param name="col_names" value=",FirstName,LastName,,BirthDate,"/> |
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224 </section> |
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225 </repeat> |
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226 <param name="sqlquery" value="select FirstName,LastName,re_sub('^\d{2}(\d{2})-(\d\d)-(\d\d)','\3/\2/\1',BirthDate) as "DOB" from t1 WHERE re_search('[hp]er',c4)"/> |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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227 <output name="output" file="regex_results.tsv"/> |
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228 </test> |
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229 |
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230 <test> |
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231 <repeat name="tables"> |
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232 <param name="table" ftype="tabular" value="IEDB.tsv"/> |
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233 <section name="input_opts"> |
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234 <repeat name="linefilters"> |
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235 <conditional name="filter"> |
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236 <param name="filter_type" value="comment"/> |
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237 <param name="comment_char" value="35"/> |
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238 </conditional> |
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239 </repeat> |
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240 </section> |
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241 <section name="tbl_opts"> |
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242 <param name="table_name" value="iedb"/> |
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243 <param name="col_names" value="ID,allele,seq_num,start,end,length,peptide,method,percentile_rank,ann_ic50,ann_rank,smm_ic50,smm_rank,comblib_sidney2008_score,comblib_sidney2008_rank,netmhcpan_ic50,netmhcpan_rank"/> |
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244 </section> |
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245 </repeat> |
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246 <repeat name="tables"> |
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247 <param name="table" ftype="tabular" value="netMHC_summary.tsv"/> |
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248 <section name="input_opts"> |
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249 <repeat name="linefilters"> |
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250 <conditional name="filter"> |
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251 <param name="filter_type" value="skip"/> |
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252 <param name="skip_lines" value="1"/> |
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253 </conditional> |
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254 </repeat> |
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255 </section> |
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256 <section name="tbl_opts"> |
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257 <param name="table_name" value="mhc_summary"/> |
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258 <param name="col_names" value="pos,peptide,logscore,affinity,Bind_Level,Protein,Allele"/> |
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259 </section> |
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260 </repeat> |
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261 <param name="sqlquery" value="select iedb.ID,iedb.peptide,iedb.start,iedb.end,iedb.percentile_rank,mhc_summary.logscore,mhc_summary.affinity,mhc_summary.Bind_Level from iedb left outer join mhc_summary on iedb.peptide = mhc_summary.peptide order by affinity,Bind_Level,percentile_rank"/> |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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262 <output name="output" file="query_results.tsv"/> |
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263 </test> |
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264 |
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265 <test> |
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266 <section name="add_to_database"> |
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267 <param name="withdb" ftype="sqlite" value="testdb.sqlite"/> |
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268 </section> |
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269 <repeat name="tables"> |
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270 <param name="table" ftype="tabular" value="pets.tsv"/> |
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271 <section name="input_opts"> |
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272 <repeat name="linefilters"> |
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273 <conditional name="filter"> |
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274 <param name="filter_type" value="regex"/> |
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275 <param name="regex_pattern" value="^\d+"/> |
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276 <param name="regex_action" value="include_find"/> |
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277 </conditional> |
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278 </repeat> |
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279 <repeat name="linefilters"> |
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280 <conditional name="filter"> |
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281 <param name="filter_type" value="comment"/> |
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282 <param name="comment_char" value="35"/> |
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283 </conditional> |
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284 </repeat> |
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285 <repeat name="linefilters"> |
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286 <conditional name="filter"> |
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287 <param name="filter_type" value="append_line_num"/> |
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288 </conditional> |
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289 </repeat> |
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290 <repeat name="linefilters"> |
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291 <conditional name="filter"> |
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292 <param name="filter_type" value="select_columns"/> |
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293 <param name="columns" value="7,2,3,4,1"/> |
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294 </conditional> |
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295 </repeat> |
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296 <repeat name="linefilters"> |
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297 <conditional name="filter"> |
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298 <param name="filter_type" value="replace"/> |
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299 <param name="column" value="c4"/> |
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300 <param name="regex_pattern" value="(\d+)/(\d+)/(\d+)"/> |
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301 <param name="regex_replace" value="19\3-\2-\1"/> |
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302 </conditional> |
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303 </repeat> |
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304 </section> |
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305 <section name="tbl_opts"> |
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306 <param name="table_name" value="people"/> |
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307 <param name="col_names" value="id,first,last,dob,pets"/> |
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308 </section> |
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309 </repeat> |
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310 <param name="sqlquery" value="SELECT people.id,first,last,pets,quote FROM people JOIN contacts ON people.first = contacts.first_name"/> |
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311 <output name="output" file="add_to_db_results.tsv"/> |
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312 </test> |
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313 |
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314 <test> |
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315 <repeat name="tables"> |
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316 <param name="table" ftype="tabular" value="pets.tsv"/> |
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317 <section name="input_opts"> |
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318 <repeat name="linefilters"> |
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319 <conditional name="filter"> |
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320 <param name="filter_type" value="regex"/> |
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321 <param name="regex_pattern" value="^\d+"/> |
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322 <param name="regex_action" value="include_find"/> |
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323 </conditional> |
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324 </repeat> |
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325 <repeat name="linefilters"> |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
326 <conditional name="filter"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
327 <param name="filter_type" value="comment"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
328 <param name="comment_char" value="35"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
329 </conditional> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
330 </repeat> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
331 <repeat name="linefilters"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
332 <conditional name="filter"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
333 <param name="filter_type" value="append_line_num"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
334 </conditional> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
335 </repeat> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
336 <repeat name="linefilters"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
337 <conditional name="filter"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
338 <param name="filter_type" value="select_columns"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
339 <param name="columns" value="7,2,3,4,1"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
340 </conditional> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
341 </repeat> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
342 <repeat name="linefilters"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
343 <conditional name="filter"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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diff
changeset
|
344 <param name="filter_type" value="replace"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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345 <param name="column" value="c4"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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346 <param name="regex_pattern" value="(\d+)/(\d+)/(\d+)"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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347 <param name="regex_replace" value="19\3-\2-\1"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
348 </conditional> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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349 </repeat> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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350 </section> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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351 <section name="tbl_opts"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
352 <param name="table_name" value="people"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
353 <param name="col_names" value="id,first,last,dob,pets"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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354 </section> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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355 </repeat> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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356 <repeat name="tables"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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357 <param name="table" ftype="tabular" value="pets.tsv"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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358 <section name="input_opts"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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359 <repeat name="linefilters"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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changeset
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360 <conditional name="filter"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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changeset
|
361 <param name="filter_type" value="regex"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
362 <param name="regex_pattern" value="^\d+"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
363 <param name="regex_action" value="include_find"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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364 </conditional> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
365 </repeat> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
366 <repeat name="linefilters"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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changeset
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367 <conditional name="filter"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
368 <param name="filter_type" value="append_line_num"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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369 </conditional> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
370 </repeat> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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371 <repeat name="linefilters"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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changeset
|
372 <conditional name="filter"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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373 <param name="filter_type" value="select_columns"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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374 <param name="columns" value="c7,c5,c6"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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375 </conditional> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
376 </repeat> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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377 <repeat name="linefilters"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
378 <conditional name="filter"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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379 <param name="filter_type" value="normalize"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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380 <param name="columns" value="c2,c3"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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381 <param name="separator" value=","/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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382 </conditional> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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383 </repeat> |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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384 </section> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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385 <section name="tbl_opts"> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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386 <param name="table_name" value="pet"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
387 <param name="col_names" value="id,name,animal"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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388 </section> |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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389 </repeat> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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390 <param name="sqlquery" value="SELECT people.id,first,last,dob,name,animal,pets FROM people JOIN pet ON people.id = pet.id WHERE animal = 'cat'"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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391 <output name="output" file="pet_normalized_query_results.tsv"/> |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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changeset
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392 </test> |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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393 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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|
394 </tests> |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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|
395 <help><![CDATA[ |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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|
396 ============= |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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397 Query Tabular |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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|
398 ============= |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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|
399 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
400 **Inputs** |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
401 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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changeset
|
402 Loads tabular datasets into a SQLite_ data base. |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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changeset
|
403 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
404 An existing SQLite_ data base can be used as input, and any selected tabular datasets will be added as new tables in that data base. |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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|
405 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
406 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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|
407 @LINEFILTERS_HELP@ |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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changeset
|
408 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
409 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
410 **Outputs** |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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parents:
diff
changeset
|
411 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
412 The results of a SQL query are output to the history as a tabular file. |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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|
413 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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414 The SQLite_ data base can also be saved and output as a dataset in the history. |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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parents:
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changeset
|
415 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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416 *(The* **SQLite to tabular** *tool can run additional queries on this database.)* |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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parents:
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417 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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418 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
419 @QUERY_HELP@ |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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420 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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421 @LINEFILTERS_HELP_EXAMPLE@ |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
422 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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423 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
424 Table name: pets |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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425 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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|
426 Table columns: Pets,FirstName,LastName,Birthdate,PetNames,PetType,line_num,entry_num,row_num |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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427 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
428 Query: SELECT * FROM pets |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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429 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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430 Result: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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431 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
432 ====== ========== ======== ========== ========= ======== ========= ========== ======== |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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433 #Pets FirstName LastName BirthDate PetNames PetType line_num entry_num row_num |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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|
434 ====== ========== ======== ========== ========= ======== ========= ========== ======== |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
435 2 Paula Brown 1978-05-24 Rex dog 3 1 1 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
436 2 Paula Brown 1978-05-24 Fluff cat 3 1 2 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
437 1 Steven Jones 1974-04-04 Allie cat 4 2 3 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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changeset
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438 0 Jane Doe 1978-05-24 5 3 4 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
439 1 James Smith 1980-10-20 Spot 6 4 5 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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|
440 ====== ========== ======== ========== ========= ======== ========= ========== ======== |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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441 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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442 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
443 **Normalizing by Line Filtering into 2 Tables** |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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444 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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changeset
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445 *Relational database opertions work with single-valued column entries. |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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446 To apply relational operations to tabular files that contain fields with lists of values, |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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447 we need to "normalize" those fields, duplicating lines for each item in the list. |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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448 In this example we create 2 tables, one for single-valued fields and a second with list-valued fields normalized. |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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449 Becauce we add a line number first for each table, we can join the 2 tables on the line number column.* |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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|
450 https://en.wikipedia.org/wiki/First_normal_form |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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451 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
452 *People Table* |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
453 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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|
454 :: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
455 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
456 Filter 1 - by regex expression matching [include]: '^\d+' (include lines that start with a number) |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
457 Filter 2 - append a line number column: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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changeset
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458 Filter 3 - regex replace value in column[4]: '(\d+)/(\d+)/(\d+)' '19\3-\2-\1' (convert dates to sqlite format) |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
459 Filter 4 - select columns 7,2,3,4,1 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
460 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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|
461 Table: People |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
462 Columns: id,FirstName,LastName,DOB,Pets |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
463 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
464 == ========= ======== ========== ==== |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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465 id FirstName LastName DOB Pets |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
466 == ========= ======== ========== ==== |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
467 1 Paula Brown 1978-05-24 2 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
468 2 Steven Jones 1974-04-04 1 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
469 3 Jane Doe 1978-05-24 0 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
470 4 James Smith 1980-10-20 1 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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parents:
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|
471 == ========= ======== ========== ==== |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
472 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
473 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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|
474 *Pet Table* |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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475 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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|
476 :: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
477 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
478 Filter 1 - by regex expression matching [include]: '^\d+' (include lines that start with a number) |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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|
479 Filter 2 - append a line number column: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
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480 Filter 3 - by regex expression matching [exclude]: '^0\t' (exclude lines with no pets) |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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481 Filter 4 - normalize list columns[5,6]: |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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482 Filter 5 - select columns 7,5,6 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
483 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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|
484 Table: Pet |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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485 Columns: id,PetName,PetType |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
486 |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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|
487 == ======== ======== |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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|
488 id PetName PetType |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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|
489 == ======== ======== |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
490 1 Rex dog |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
491 1 Fluff cat |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
492 2 Allie cat |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
493 4 Spot |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
|
494 == ======== ======== |
3708ff0198b7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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changeset
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495 |
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496 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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497 Query: SELECT FirstName,LastName,PetName FROM People JOIN Pet ON People.id = Pet.id WHERE PetType = 'cat'; |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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498 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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499 Result: |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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500 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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501 ========= ======== ======== |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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502 FirstName LastName PetName |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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503 ========= ======== ======== |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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504 Paula Brown Fluff |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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505 Steven Jones Allie |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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506 ========= ======== ======== |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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507 |
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508 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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509 ]]></help> |
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510 </tool> |