diff query_tabular.xml @ 13:cf34c344508d draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"

--- a/query_tabular.xml	Sat Jun 19 14:15:41 2021 +0000
+++ b/query_tabular.xml	Thu Aug 19 19:40:53 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="query_tabular" name="Query Tabular" version="3.2.0">
+<tool id="query_tabular" name="Query Tabular" version="3.3.0">
     <description>using sqlite sql</description>
 
     <macros>
@@ -78,6 +78,7 @@
   #if len($idx_non) > 0:
     #set $jtbl['index'] = $idx_non
   #end if
+  #set $dataset_name = $tbl.table.element_identifier
   #set $linefilters = $tbl.input_opts.linefilters
   @LINEFILTERS@
   #if $input_filters:
@@ -190,6 +191,7 @@
         </data>
     </outputs>
     <tests>
+        <!-- Test 1 -->
         <test>
             <repeat name="tables">
                 <param name="table" ftype="tabular" value="customers.tsv"/>
@@ -225,6 +227,7 @@
             <output name="output" file="sales_results.tsv"/>
         </test>
 
+        <!-- Test 2 -->
         <test>
             <repeat name="tables">
                 <param name="table" ftype="tabular" value="customers.tsv"/>
@@ -255,6 +258,7 @@
             <output name="output" file="sales_results.tsv"/>
         </test>
 
+        <!-- Test 3 -->
         <test>
             <repeat name="tables">
                 <param name="table" ftype="tabular" value="customers.tsv"/>
@@ -274,6 +278,7 @@
             <output name="output" file="regex_results.tsv"/>
         </test>
 
+        <!-- Test 4 -->
         <test>
             <repeat name="tables">
                 <param name="table" ftype="tabular" value="IEDB.tsv"/>
@@ -309,6 +314,7 @@
             <output name="output" file="query_results.tsv"/>
         </test>
 
+        <!-- Test 5 -->
         <test>
             <section name="add_to_database">
                 <param name="withdb" ftype="sqlite" value="testdb.sqlite"/>
@@ -358,6 +364,7 @@
             <output name="output" file="add_to_db_results.tsv"/>
         </test>
 
+        <!-- Test 6 -->
         <test>
             <repeat name="tables">
                 <param name="table" ftype="tabular" value="pets.tsv"/>
@@ -438,6 +445,7 @@
             <output name="output" file="pet_normalized_query_results.tsv"/>
         </test>
 
+        <!-- Test 7 -->
         <test>
             <repeat name="tables">
                 <param name="table" ftype="tabular" value="psm_report.tsv"/>
@@ -463,6 +471,7 @@
             <output name="output" file="psm_report_out1.tsv" compare="re_match"/>
         </test>
 
+        <!-- Test 8 column_names_from_first_line -->
         <test>
             <repeat name="tables">
                 <param name="table" ftype="tabular" value="psm_report.tsv"/>
@@ -488,6 +497,7 @@
             <output name="output" file="psm_report_out2.tsv" compare="re_match"/>
         </test>
 
+        <!-- Test 9  modify database -->
         <test>
             <repeat name="tables">
                 <param name="table" ftype="tabular" value="psm_report.tsv"/>
@@ -528,6 +538,7 @@
             <output name="output1" file="psm_dbmod_output1.tsv" compare="re_match"/>
         </test>
 
+        <!-- Test 10 column_names_from_first_line -->
         <test>
             <repeat name="tables">
                 <param name="table" ftype="tabular" value="netMHC_summary.tsv"/>
@@ -553,6 +564,7 @@
             <output name="output" file="netMHC_summary_out1.tsv" ftype="tabular"/>
         </test>
 
+        <!-- Test 11 -->
         <test>
             <repeat name="tables">
                 <param name="table" ftype="tabular" value="netMHC_summary.tsv"/>
@@ -579,7 +591,8 @@
             <output name="output" file="netMHC_summary_out2.tsv" ftype="tabular"/>
         </test>
 
-        <test> <!-- math functions -->
+        <!-- Test 12 math functions -->
+        <test>
             <repeat name="tables">
                 <param name="table" ftype="tabular" value="math_input.tsv"/>
             </repeat>