Mercurial > repos > iuc > query_tabular
diff query_tabular.xml @ 15:cf4397560712 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
| author | iuc |
|---|---|
| date | Thu, 27 Jun 2024 17:23:34 +0000 |
| parents | 3a6b78c39dca |
| children |
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--- a/query_tabular.xml Wed Sep 13 12:15:42 2023 +0000 +++ b/query_tabular.xml Thu Jun 27 17:23:34 2024 +0000 @@ -1,4 +1,4 @@ -<tool id="query_tabular" name="Query Tabular" version="3.3.1"> +<tool id="query_tabular" name="Query Tabular" version="3.3.2"> <description>using sqlite sql</description> <macros> @@ -37,6 +37,7 @@ #set $jtbls = [] #set $jtbldef['tables'] = $jtbls #for $i,$tbl in enumerate($tables): + #set $table = $tbl.table #set $jtbl = dict() #set $jtbl['file_path'] = str($tbl.table) #if $tbl.tbl_opts.table_name: @@ -137,7 +138,7 @@ You can override the default names by entering a comma -separated list of names, e.g. ',name1,,,name2' would rename the second and fifth columns. </help> <sanitizer sanitize="False"/> - <validator type="regex" message="A List of names separated by commas: Column names should start with a letter and may contain additional letters, digits, and underscores. Otherwise, the name must be eclosed in: double quotes, back quotes, or square brackets.">^([A-Za-z]\w*|"\S+[^,"]*"|`\S+[^,`]*`|[[]\S+[^,"]*[]])?(,([A-Za-z]\w*|"\S+.*"|`\S+[^,`]*`|[[]\S+[^,"]*[]])?)*$</validator> + <validator type="regex" message="A List of names separated by commas: Column names should start with a letter and may contain additional letters, digits, and underscores. Otherwise, the name must be eclosed in: double quotes, back quotes, or square brackets.">^([A-Za-z]\w*|"\S+[^,"]*"|`\S+[^,`]*`|\[\S+[^,"]*\])?(,([A-Za-z]\w*|"\S+[^,"]*"|`\S+[^,`]*`|\[\S+[^,"]*\])?)*$</validator> </param> <param name="load_named_columns" type="boolean" truevalue="load_named_columns" falsevalue="" checked="false" label="Only load the columns you have named into database"/> <param name="pkey_autoincr" type="text" value="" optional="true" label="Add an auto increment primary key column with this name" @@ -148,7 +149,7 @@ <param name="unique" type="boolean" truevalue="yes" falsevalue="no" checked="False" label="This is a unique index"/> <param name="index_columns" type="text" value="" label="Index on Columns"> <help>Create an index on the column names: e.g. for default column names: c1 or c2,c4 ( use the names you gave for columns)</help> - <validator type="regex" message="Column name, separated by commes if more than one">^([A-Za-z]\w*|"\S+[^,"]*"|`\S+[^,`]*`|[[]\S+[^,"]*[]])(,([A-Za-z]\w*|"\S+.*"|`\S+[^,`]*`|[[]\S+[^,"]*[]])?)*$</validator> + <validator type="regex" message="Column name, separated by commes if more than one">^([A-Za-z]\w*|"\S+[^,"]*"|`\S+[^,`]*`|\[\S+[^,"]*\])(,([A-Za-z]\w*|"\S+[^,"]"|`\S+[^,`]*`|\[\S+[^,"]*\])?)*$</validator> <sanitizer sanitize="False"/> </param> </repeat> @@ -192,7 +193,7 @@ </outputs> <tests> <!-- Test 1 --> - <test> + <test expect_num_outputs="1"> <repeat name="tables"> <param name="table" ftype="tabular" value="customers.tsv"/> <section name="input_opts"> @@ -228,7 +229,7 @@ </test> <!-- Test 2 --> - <test> + <test expect_num_outputs="1"> <repeat name="tables"> <param name="table" ftype="tabular" value="customers.tsv"/> <section name="input_opts"> @@ -259,7 +260,7 @@ </test> <!-- Test 3 --> - <test> + <test expect_num_outputs="1"> <repeat name="tables"> <param name="table" ftype="tabular" value="customers.tsv"/> <section name="input_opts"> @@ -279,7 +280,7 @@ </test> <!-- Test 4 --> - <test> + <test expect_num_outputs="1"> <repeat name="tables"> <param name="table" ftype="tabular" value="IEDB.tsv"/> <section name="input_opts"> @@ -315,7 +316,7 @@ </test> <!-- Test 5 --> - <test> + <test expect_num_outputs="1"> <section name="add_to_database"> <param name="withdb" ftype="sqlite" value="testdb.sqlite"/> </section> @@ -365,7 +366,7 @@ </test> <!-- Test 6 --> - <test> + <test expect_num_outputs="1"> <repeat name="tables"> <param name="table" ftype="tabular" value="pets.tsv"/> <section name="input_opts"> @@ -446,7 +447,7 @@ </test> <!-- Test 7 --> - <test> + <test expect_num_outputs="1"> <repeat name="tables"> <param name="table" ftype="tabular" value="psm_report.tsv"/> <section name="input_opts"> @@ -472,7 +473,7 @@ </test> <!-- Test 8 column_names_from_first_line --> - <test> + <test expect_num_outputs="1"> <repeat name="tables"> <param name="table" ftype="tabular" value="psm_report.tsv"/> <section name="input_opts"> @@ -498,7 +499,7 @@ </test> <!-- Test 9 modify database --> - <test> + <test expect_num_outputs="2"> <repeat name="tables"> <param name="table" ftype="tabular" value="psm_report.tsv"/> <section name="input_opts"> @@ -539,7 +540,7 @@ </test> <!-- Test 10 column_names_from_first_line --> - <test> + <test expect_num_outputs="1"> <repeat name="tables"> <param name="table" ftype="tabular" value="netMHC_summary.tsv"/> <section name="input_opts"> @@ -565,7 +566,7 @@ </test> <!-- Test 11 --> - <test> + <test expect_num_outputs="1"> <repeat name="tables"> <param name="table" ftype="tabular" value="netMHC_summary.tsv"/> <section name="input_opts"> @@ -592,7 +593,7 @@ </test> <!-- Test 12 math functions --> - <test> + <test expect_num_outputs="1"> <repeat name="tables"> <param name="table" ftype="tabular" value="math_input.tsv"/> </repeat>