comparison quickmerge.xml @ 1:9acf91225108 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quickmerge commit 6c59f5f3a581794eee2b28eaf4b091cc8ac8571e

0:436c1d3c990a

    <!-- Standard run with advanced params set -->
    <test expect_num_outputs="1">
      <param name="input_query" value="ecoli_nanopore.fasta" ftype="fasta" />
      <param name="input_ref" value="ecoli_illumina.fasta" ftype="fasta" />
      <param name="advanced.nucmer_min_len" value="20" />
      <param name="advanced.delta_min_len" value="0" />
      <param name="advanced.hco" value="0" />
      <param name="advanced.c" value="5000" />
      <param name="advanced.l" value="1.5" />
      <param name="advanced.ml" value="5.0" />
      <output name="merged_fasta" ftype="fasta" file="merged.fasta" />
    </test>
  </tests>

  <help><![CDATA[

1:9acf91225108

    <!-- Standard run with advanced params set -->
    <test expect_num_outputs="1">
      <param name="input_query" value="ecoli_nanopore.fasta" ftype="fasta" />
      <param name="input_ref" value="ecoli_illumina.fasta" ftype="fasta" />
      <section name="advanced">
        <param name="nucmer_min_len" value="21" />
        <param name="delta_min_len" value="1" />
        <param name="hco" value="0" />
        <param name="l" value="150" />
        <param name="ml" value="4999" />
        <param name="c" value="1.6" />
      </section>
      <output name="merged_fasta" ftype="fasta" file="merged.fasta" />
      <assert_command>
        <has_text text="-hco 0"/>
      </assert_command>
    </test>
  </tests>

  <help><![CDATA[