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changeset 1:9acf91225108 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quickmerge commit 6c59f5f3a581794eee2b28eaf4b091cc8ac8571e
author iuc
date Thu, 03 Oct 2024 14:28:31 +0000
parents 436c1d3c990a
children
files quickmerge.xml
diffstat 1 files changed, 11 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/quickmerge.xml	Fri Jul 08 10:35:37 2022 +0000
+++ b/quickmerge.xml	Thu Oct 03 14:28:31 2024 +0000
@@ -260,13 +260,18 @@
     <test expect_num_outputs="1">
       <param name="input_query" value="ecoli_nanopore.fasta" ftype="fasta" />
       <param name="input_ref" value="ecoli_illumina.fasta" ftype="fasta" />
-      <param name="advanced.nucmer_min_len" value="20" />
-      <param name="advanced.delta_min_len" value="0" />
-      <param name="advanced.hco" value="0" />
-      <param name="advanced.c" value="5000" />
-      <param name="advanced.l" value="1.5" />
-      <param name="advanced.ml" value="5.0" />
+      <section name="advanced">
+        <param name="nucmer_min_len" value="21" />
+        <param name="delta_min_len" value="1" />
+        <param name="hco" value="0" />
+        <param name="l" value="150" />
+        <param name="ml" value="4999" />
+        <param name="c" value="1.6" />
+      </section>
       <output name="merged_fasta" ftype="fasta" file="merged.fasta" />
+      <assert_command>
+        <has_text text="-hco 0"/>
+      </assert_command>
     </test>
   </tests>