Mercurial > repos > iuc > raceid_main
diff macros.xml @ 0:e01c989c7543 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raceid commit 39918bfdb08f06862ca395ce58a6f5e4f6dd1a5e
| author | iuc |
|---|---|
| date | Sat, 03 Mar 2018 17:34:16 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Sat Mar 03 17:34:16 2018 -0500 @@ -0,0 +1,37 @@ +<?xml version="1.0"?> +<macros> + <xml name="citations"> + <citations> + <citation type="doi">10.1038/nature14966</citation> + </citations> + </xml> + <xml name="requirements"> + <requirements> + <requirement type="package" >r</requirement> + <requirement type="package" >r-tsne</requirement> + <requirement type="package" >r-pheatmap</requirement> + <requirement type="package" >r-mass</requirement> + <requirement type="package" >r-mclust</requirement> + <requirement type="package" >r-flexmix</requirement> + <requirement type="package" >r-lattice</requirement> + <requirement type="package" >r-fpc</requirement> + <requirement type="package" >r-rcolorbrewer</requirement> + <requirement type="package" >r-permute</requirement> + <requirement type="package" >r-amap</requirement> + <requirement type="package" >r-locfit</requirement> + </requirements> + </xml> + <token name="@VERSION@">1.0</token> + <token name="@SCRIPT_DIR@">$__tool_directory__/scripts</token> + + <!-- Set hidden/retired outputs --> + <token name="@out_rdat_filter@">out_rdat_filter.rds</token> + <token name="@out_rdat_kmeans@">out_rdat_kmeans.rds</token> + <token name="@out_rdat_outlier@">out_rdat_outlier.rds</token> + + <!-- Set hidden/retired inputs --> + <!-- tsne -> outlier -> kmeans -> filter --> + <token name="@inp_rdat_kmeans@">out_rdat_filter.rds</token> + <token name="@inp_rdat_outlier@">out_rdat_kmeans.rds</token> + <token name="@inp_rdat_tsne@">out_rdat_outlier.rds</token> +</macros>