comparison raceid_trajectory.xml @ 10:2bfd55b87af3 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raceid3 commit 0ffa71ef9f8d020fe7ba94502db8cec26fd8741f

9:2af7c5086a96

    <description>generates lineage from prior clustering</description>
    <macros>
        <import>macros.xml</import>
        <import>macros_cheetah.xml</import>
    </macros>
    <expand macro="requirements" />
    <expand macro="version_command_config" prog="pseudotemporal.R" cheetah="TRAJECTORY_CHEETAH" />

    <inputs>
        <param name="inputrds" type="data" format="rds" label="Input RDS" help="This is the output RDS file given by the Cluster stage" />

StemID2
=========

StemID is an algorithm for the inference of lineage trees and differentiation trajectories based on pseudo-temporal ordering of single-cell transcriptomes. It utilizies the clusters predicted by RaceID clustering tool.

In a nutshell, StemID infers links between clusters which are more populated with intermediate single-cell transcriptomes than expected by chance. 

This will generate an RDS object, and a PDF showing a minimal spanning tree between the clusters, with the strength between clusters given by the colour and thickness of the branches.


]]></help>

10:2bfd55b87af3

    <description>generates lineage from prior clustering</description>
    <macros>
        <import>macros.xml</import>
        <import>macros_cheetah.xml</import>
    </macros>
    <expand macro="bio_tools"/>
    <expand macro="requirements" />
    <expand macro="version_command_config" prog="pseudotemporal.R" cheetah="TRAJECTORY_CHEETAH" />

    <inputs>
        <param name="inputrds" type="data" format="rds" label="Input RDS" help="This is the output RDS file given by the Cluster stage" />

StemID2
=========

StemID is an algorithm for the inference of lineage trees and differentiation trajectories based on pseudo-temporal ordering of single-cell transcriptomes. It utilizies the clusters predicted by RaceID clustering tool.

In a nutshell, StemID infers links between clusters which are more populated with intermediate single-cell transcriptomes than expected by chance.

This will generate an RDS object, and a PDF showing a minimal spanning tree between the clusters, with the strength between clusters given by the colour and thickness of the branches.


]]></help>