Mercurial > repos > iuc > raxml
comparison raxml.xml @ 4:73a469f7dc96 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit 41f2f31556bf0dc676aff59ba74d9e5939a43caf"
| author | iuc |
|---|---|
| date | Sun, 19 Apr 2020 16:44:27 -0400 |
| parents | 14eb2acf30e3 |
| children | 29ff6a849eac |
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| 3:14eb2acf30e3 | 4:73a469f7dc96 |
|---|---|
| 1 <tool id="raxml" name="Phyogenetic reconstruction with RaXML" version="8.2.4+galaxy2"> | 1 <tool id="raxml" name="Phyogenetic reconstruction with RAxML" version="8.2.4+galaxy2"> |
| 2 <description>- Maximum Likelihood based inference of large phylogenetic trees</description> | 2 <description>- Maximum Likelihood based inference of large phylogenetic trees</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="8.2.4">raxml</requirement> | 4 <requirement type="package" version="8.2.4">raxml</requirement> |
| 5 <requirement type="package" version="3.6">python</requirement> | 5 <requirement type="package" version="3.6">python</requirement> |
| 6 </requirements> | 6 </requirements> |
| 115 --multiple_model '$selExtraOpts.multiple_model' | 115 --multiple_model '$selExtraOpts.multiple_model' |
| 116 #end if | 116 #end if |
| 117 #end if | 117 #end if |
| 118 ]]></command> | 118 ]]></command> |
| 119 <inputs> | 119 <inputs> |
| 120 <param name="infile" argument="-s" type="data" format="fasta,phylip" label="Source file" /> | 120 <param name="infile" argument="-s" type="data" format="fasta,phylip" label="Source file with aligned sequences" |
| 121 help="At least four aligned genomes are needed for RAxML." /> | |
| 121 <conditional name="search_model_selector"> | 122 <conditional name="search_model_selector"> |
| 122 <param name="model_type" type="select" label="Model type"> | 123 <param name="model_type" type="select" label="Model type"> |
| 123 <option value="nucleotide" selected="true">Nucleotide</option> | 124 <option value="nucleotide" selected="true">Nucleotide</option> |
| 124 <option value="aminoacid">Amino Acid</option> | 125 <option value="aminoacid">Amino Acid</option> |
| 125 <option value="binary">Binary</option> | 126 <option value="binary">Binary</option> |