# HG changeset patch
# User iuc
# Date 1658416580 0
# Node ID 29ff6a849eac4efad4dcf7c360316623b9cd4d09
# Parent  73a469f7dc962f746481cf79232710a9c35fc57b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit 6e1b47bf8f06b9d92b369c2f36e52f4fc451d39c

diff -r 73a469f7dc96 -r 29ff6a849eac raxml.xml
--- a/raxml.xml	Sun Apr 19 16:44:27 2020 -0400
+++ b/raxml.xml	Thu Jul 21 15:16:20 2022 +0000
@@ -1,7 +1,14 @@
-<tool id="raxml" name="Phyogenetic reconstruction with RAxML" version="8.2.4+galaxy2">
+<tool id="raxml" name="Phyogenetic reconstruction with RAxML" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
     <description>- Maximum Likelihood based inference of large phylogenetic trees</description>
+    <macros>
+        <token name="@TOOL_VERSION@">8.2.4</token>
+        <token name="@VERSION_SUFFIX@">3</token>
+    </macros>
+    <xrefs>
+        <xref type="bio.tools">raxml</xref>
+    </xrefs>
     <requirements>
-        <requirement type="package" version="8.2.4">raxml</requirement>
+        <requirement type="package" version="@TOOL_VERSION@">raxml</requirement>
         <requirement type="package" version="3.6">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
@@ -466,7 +473,7 @@
                     <has_text_matching expression="Chicken" />
                 </assert_contents>
             </output>
-            <output name="parsimonyTreeReq" file="RAxML_parsimonyTree.galaxy.multi" ftype="nhx"/>
+            <output name="parsimonyTreeReq" file="RAxML_parsimonyTree.galaxy.multi" ftype="nhx" compare="re_match"/>
             <output name="bestTree" ftype="nhx">
                 <assert_contents>
                     <has_text_matching expression="Whale" />
diff -r 73a469f7dc96 -r 29ff6a849eac test-data/RAxML_parsimonyTree.galaxy.multi
--- a/test-data/RAxML_parsimonyTree.galaxy.multi	Sun Apr 19 16:44:27 2020 -0400
+++ b/test-data/RAxML_parsimonyTree.galaxy.multi	Thu Jul 21 15:16:20 2022 +0000
@@ -1,1 +1,1 @@
-((Whale:0.00000100000050002909,(((Human:0.53594305845070155936,Seal:0.02530146292078635367):0.22193621954611089664,Frog:0.10286092072478680848):0.21862941933399418493,(Chicken:0.20757792196205043789,(Mouse:0.08330390883767016530,Rat:0.08037715347256141341):0.07528731153882931015):0.12712658591923928220):0.03338415401578518488):0.14391313040760642106,(Carp:0.35121248438619490084,Loach:0.00000100000050002909):0.21735437670664689569,Cow:0.06259549717909577982):0.0;
+\(\(Whale:0.0000[0-9]*,\(\(\(Human:0.5359[0-9]*,Seal:0.0253[0-9]*\):0.2219[0-9]*,Frog:0.1028[0-9]*\):0.2186[0-9]*,\(Chicken:0.2075[0-9]*,\(Mouse:0.0833[0-9]*,Rat:0.0803[0-9]*\):0.0752[0-9]*\):0.1271[0-9]*\):0.0333[0-9]*\):0.1439[0-9]*,\(Carp:0.3512[0-9]*,Loach:0.0000[0-9]*\):0.2173[0-9]*,Cow:0.0625[0-9]*\):0.0;