Mercurial > repos > iuc > rcorrector

view test-data/fixed_sample_read2.cor.fq @ 0:9a0b65ad3c84 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rcorrector commit eba2cb86379f6ee6899a1141226e191c63fadfa6
author iuc
date Thu, 13 Sep 2018 07:00:00 -0400
parents
children
line wrap: on
line source

@Id_4 Part1.fastq.000000009 contig=chr1:317720-453948W:ENST00000445840.1:2:180:5:85:A/2 haplotype=0 length=100 orig_begin=0 orig_end=76 haplotype_infix=CCTTCCAGTTGTTTTTTCTCTTCCTCGAGCTTCCTTATCTCCTCCTGTTGAATCATTTTAAGATGCTCGAACTTGT edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
CCTTCCAGTTGTTTTTTCTCTTCCTCGAGCTTCCTTATCTCCTCCTGTTGAATCATTTTAAGATGCTCGAACTTGT
+
E8HCG>;DFBG?@CG@B?D:AQAD5.;9>7@>@:8=<20J;68<<706;B==:8505278D<64.F=02'5>0=1:
@Id_6 Part1.fastq.000000013 contig=chr1:317720-453948W:ENST00000445840.1:4:180:-6:131:A/1 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=CAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTTTTCTCTTCCTCGAGCTTCCTTATCTCCTCCTGTTGAATC edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
CAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTTTTCTCTTCCTCGAGCTTCCTTATCTCCTCCTGTTGAATC
+
HDLBAAACCA<K;=9<@@BC>@=JG>7<:A=BG@9+=6A8+<AB;339:6>6=49L<15<39+0&1:2.1/260('';1003=0)A*.-*,";$/61+"#
@Id_8 Part1.fastq.000000017 contig=chr1:317720-453948W:ENST00000445840.1:6:180:12:230:A/1 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTTACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGC edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTTACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGC
+
?ECI@F@IEAFF8F?9<@@:9@BA4@@??@C:1D89=><=58915P259+JE=:5719A,->0,-5125%@7(=1/>.-.!&60!/=5,6*8/5,*3'68
@Id_12 Part1.fastq.000000025 contig=chr1:317720-453948W:ENST00000445840.1:10:180:19:72:A/1 haplotype=0 length=100 orig_begin=0 orig_end=49 haplotype_infix=TTTTCTCTTCCTCGAGCTTCCTTATCTCCTCCTGTTGAATCATTTTAAG edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
TTTTCTCTTCCTCGAGCTTCCTTATCTCCTCCTGTTGAATCATTTTAAG
+
ADD@DDD@9GA=>M:DCG=:;>884==;>B;6;9;<@9<@/F=H@7=A9
@Id_13 Part1.fastq.000000027 contig=chr1:317720-453948W:ENST00000445840.1:11:180:3:115:A/1 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=GCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTTTTCTCTTCCTCGAGCTTCCTTATCTCCTCCTGTTGAATCATTTTAAGATGCTCGA edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
GCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTTTTCTCTTCCTCGAGCTTCCTTATCTCCTCCTGTTGAATCATTTTAAGATGCTCGA
+
GH@EIFABFCAC@H@:7?AH>9==::A9=:@;@D>?B;99;6:;BHA-2=55383<*-=C:4C98+/==!(*&:*=#0-315(45()=B36*+/+3%>36
@Id_14 Part1.fastq.000000029 contig=chr1:317720-453948W:ENST00000445840.1:12:180:-11:166:A/1 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=TTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTTTTCT edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMEMMMMMMMMMMMMMMMMM strand=forward exp=medium
TTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTTTTCT
+
FEEGE<IAGGDEBA:CB84>94FC?77EF9D8?<<D5::<=F5=@7??D9974??;C6*CE357+-2,26?D!2=/:#*/5&!.,2)%).#$&+1F4!)0
@Id_15 Part1.fastq.000000031 contig=chr1:317720-453948W:ENST00000445840.1:13:180:-25:144:A/1 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=TCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTTTTCTCTTCCTCGAGCTTCCTTATCTC edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
TCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTTTTCTCTTCCTCGAGCTTCCTTATCTC
+
@HBDE@C@G<:?K;@@<>>AE:8=;G;;BB9877<0I7=3<=?92FD::->BC39715+;-F840:=A5/;%<*853#")6%&4#1$).!631)3!$+!-
@Id_18 Part1.fastq.000000037 contig=chr1:317720-453948W:ENST00000445840.1:16:180:26:182:A/2 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=TTTCTTCTTACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCT edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMEMMMMMMMMMMMM strand=forward exp=medium
TTTCTTCTTACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCT
+
CIBLCIDCL>GBJ<BB;?=CC?@?=;@7:9=2EA<D<98/F@<;>33A<9111753@3806B4;B>(47368*,1!B6110,(&;/1/'->73*!4/)!+
@Id_19 Part1.fastq.000000039 contig=chr1:317720-453948W:ENST00000445840.1:17:180:-1:127:A/2 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=GCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTTTTCTCTTCCTCGAGCTTCCTTATCTCCTCCTGTTGAATCATTT edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
GCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTTTTCTCTTCCTCGAGCTTCCTTATCTCCTCCTGTTGAATCATTT
+
LCNACHCG@>L;4>>@B=ACC;A<8E4<9<;9A;C=;??9B?<54E55<9G1:41=*;28?23-7A8>-.0302,-A+$.<2:)0@-0!51!,03)!.!:
@Id_20 Part1.fastq.000000041 contig=chr1:317720-453948W:ENST00000445840.1:18:180:1:173:A/2 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=ACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGT edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
ACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGT
+
;BECDDH@AAKDK;>A6>D?7BEA===A;@F6A@:8=C9;8D8297?@,B..5:6,264262C'.:B844)0=C11-'4=.5!/!/4;7290"6/,1?7(
@Id_21 Part1.fastq.000000043 contig=chr1:317720-453948W:ENST00000445840.1:19:180:-19:117:A/1 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=CAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTTTTCTCTTCCTCGAGCTTCCTTATCTCCTCCTGTTGAATCATTTTAAGATGCTC edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
CAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTTTTCTCTTCCTCGAGCTTCCTTATCTCCTCCTGTTGAATCATTTTAAGATGCTC
+
C@BB?AB>CH>@86D>9A9DH??;6EDA9@;@:535@615?J?>0DIH3?A9?<839<8B859/,122-3*+254+7*5B/2:;1/&35&883)5%1(1>
@Id_26 Part1.fastq.000000053 contig=chr1:317720-453948W:ENST00000445840.1:24:180:50:207:A/1 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=TTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTTACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCAT edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTTACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCAT
+
FA>CGDB?;HJ??EIDB>=D;;?6:9E:B@6;;>55<:@0:;EC:76-4<<+,=0=<9:;,/A7-<:3#+;?>5<05$3&$>.,'/9*7:B-%,:/3)+-
@Id_27 Part1.fastq.000000055 contig=chr1:317720-453948W:ENST00000445840.1:25:180:14:194:A/1 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=TTTTTTTTTTTTTTTCTTCTTACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCT edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
TTTTTTTTTTTTTTTCTTCTTACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCT
+
DJ@DCE8LCFHGL?;<<OKF>AC?AE<<<=BC3A8@76C82;?9A7C;D==801?<;998639(-1819>1>42-3=7;(-*0<9/CA.10A0($)-//"
@Id_29 Part1.fastq.000000059 contig=chr1:317720-453948W:ENST00000445840.1:27:180:47:118:A/1 haplotype=0 length=100 orig_begin=0 orig_end=67 haplotype_infix=GCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTTTTCTCTTCCTCGAGCTTCC edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
GCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTTTTCTCTTCCTCGAGCTTCC
+
CF?CCDE>HDJGEF>5>?B8B<CF9CB6DF;<<@;.?9=>97F=;C614335<3;265)0:7+:@6=
@Id_32 Part1.fastq.000000065 contig=chr1:317720-453948W:ENST00000445840.1:30:180:32:142:A/1 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=AGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTTTTCTCTTCCTCGAGCTTCCTTATCTCCT edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMEMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
AGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTTTTCTCTTCCTCGAGCTTCCTTATCTCCT
+
KCA;@8GA?5@<EA?AB@=>??8FG8CAD>?;B?D<246;8=F@C99/9@E8ACB4<1>++&H6621323/(9+:(A9D&(9124!-4..++3<-202/2
@Id_33 Part1.fastq.000000067 contig=chr1:317720-453948W:ENST00000445840.1:31:180:-4:196:A/1 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=TTTTTTTTTTTTTTTTTCTTCTTACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAAT edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMEM strand=forward exp=medium
TTTTTTTTTTTTTTTTTCTTCTTACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAAT
+
DLFJBEFIC@I5K;A;<=98:HE<+D6<>D=3<-1B/>;9248>88A:2822>A:<88B4,:1F)518>8>C%,=1A95:<>+/%,4-;5(98;G)($+!
@Id_34 Part1.fastq.000000069 contig=chr1:317720-453948W:ENST00000445840.1:32:180:44:221:A/1 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTTACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCA edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTTACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCA
+
HEFG@F=88?J<CBH;=:BAEF?GDH@<<6B=2QF><?>D6<7C7C=:;C87D5*:7%>9638+@;>+?0)!*29<;1+.6&7429*8%,:?0370'+((
@Id_36 Part1.fastq.000000073 contig=chr1:317720-453948W:ENST00000445840.1:34:180:24:196:A/2 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=TTTTTTTTTTTTTTTTTCTTCTTACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAAT edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMEMM strand=forward exp=medium
TTTTTTTTTTTTTTTTTCTTCTTACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAAT
+
FGF>E?DJGA<9B@EC<CKADE;7.FF75C>696<A6?2?6<5:=895<A00=B.>:536<16%+?9A48<0:,;(&088%.1)76$4(8433#.+*1,!
@Id_37 Part1.fastq.000000075 contig=chr1:317720-453948W:ENST00000445840.1:35:180:87:166:A/1 haplotype=0 length=100 orig_begin=0 orig_end=75 haplotype_infix=TTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATG edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
TTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATG
+
>E?ABEH@==G@;A8<J@?>@==CBDC;<?D8A=9?>9F:B8;A<47<231568BC0!??.26-49C(1B484.4
@Id_38 Part1.fastq.000000077 contig=chr1:317720-453948W:ENST00000445840.1:36:180:-41:170:A/1 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=ATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTT edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMEMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
ATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTT
+
HHFIB?BF>:9=E7BC687F=?@;9>CBA==?;8C0I0E8C/5C/@669;=.71<092=846CG.%@5=A<:/*40!9.215==6'-&,717)!6'3".6