Mercurial > repos > iuc > recentrifuge
annotate test-data/kraken_test/test3_tsv.log @ 7:591175c0f051 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/recentrifuge commit e1035bf7b1b3a3d27db93cad09a9361eb04a3c44
| author | iuc |
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| date | Mon, 30 Sep 2024 09:02:38 +0000 |
| parents | 12f0968f171c |
| children |
| rev | line source |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
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12f0968f171c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/recentrifuge commit fbb5d7bb68cbb5f497cdda3c0697b21b046a8262
iuc
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2 =-= /home/pierre/miniconda3/envs/__recentrifuge@1.13.2/bin/rcf =-= v1.13.2 - Jan 2024 =-= by Jose Manuel Martà =-= |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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3 |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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4 [93mCAUTION![0m --strain experimental mode activated! |
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fe733f05c2f8
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee
iuc
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5 [90mKraken .krk files to analyze:[0m ['input_dir/kraken_out.krk'] |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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changeset
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6 [90mLoading NCBI nodes...[0m[92m OK! [0m |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
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7 [90mLoading NCBI names...[0m[92m OK! [0m |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
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8 [90mBuilding dict of parent to children taxa...[0m[92m OK! [0m |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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9 [90m |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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changeset
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10 Please, wait, processing files in parallel... |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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changeset
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11 [0m |
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fe733f05c2f8
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee
iuc
parents:
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12 [90mLoading output file input_dir/kraken_out.krk... [0m[92mOK! |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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changeset
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13 [0m[90m Seqs read: [0m99 [90m[[0m52.81 knt[90m] |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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14 [0m[90m Seqs clas: [0m99 [90m([0m0.00%[90m unclassified) |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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15 [0m[90m Seqs pass: [0m99 [90m([0m0.00%[90m rejected) |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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16 [0m[90m Scores SHEL: min = [0m36.0,[90m max = [0m347.0,[90m avr = [0m99.9 |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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17 [90m Coverage(%): min = [0m0.2,[90m max = [0m88.1,[90m avr = [0m15.4 |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
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18 [90m Read length: min = [0m198 nt,[90m max = [0m602 nt,[90m avr = [0m533 nt |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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19 [90m TaxIds: by classifier = [0m13[90m, by filter = [0m13 |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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20 [90mBuilding from raw data with mintaxa = [0m2[90m ... |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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21 [0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
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22 Info:[0m 90 [90madditional seqs discarded ([0m90.909% [90mof accepted) |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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23 [0m[93m |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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24 Warning![0m 11 orphan taxids[90m (rerun with --debug for details) |
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fe733f05c2f8
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee
iuc
parents:
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25 [0minput_dir/kraken_out[94m sample [0m[92mOK! |
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12f0968f171c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/recentrifuge commit fbb5d7bb68cbb5f497cdda3c0697b21b046a8262
iuc
parents:
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26 [0m[90mLoad elapsed time: [0m0.00424[90m sec |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
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27 [0m |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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28 [90m |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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29 Building the taxonomy multiple tree... [0m[92mOK![0m |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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30 [90mGenerating tsv extra output ([0m[95m[output.rcf.]*.tsv[0m[90m)... [0m[92mOK![0m |
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09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
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31 [90mTotal elapsed time:[0m 00:00:00 |