Mercurial > repos > iuc > recentrifuge
comparison test-data/test-db/gc.prt @ 0:09b7b0b2e2c2 draft
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
| author | iuc |
|---|---|
| date | Mon, 27 Jun 2022 11:03:22 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:09b7b0b2e2c2 |
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| 1 --************************************************************************** | |
| 2 -- This is the NCBI genetic code table | |
| 3 -- Initial base data set from Andrzej Elzanowski while at PIR International | |
| 4 -- Addition of Eubacterial and Alternative Yeast by J.Ostell at NCBI | |
| 5 -- Base 1-3 of each codon have been added as comments to facilitate | |
| 6 -- readability at the suggestion of Peter Rice, EMBL | |
| 7 -- Later additions by Taxonomy Group staff at NCBI | |
| 8 -- | |
| 9 -- Version 4.6 | |
| 10 -- Renamed genetic code 24 to Rhabdopleuridae Mitochondrial | |
| 11 -- | |
| 12 -- Version 4.5 | |
| 13 -- Added Cephalodiscidae mitochondrial genetic code 33 | |
| 14 -- | |
| 15 -- Version 4.4 | |
| 16 -- Added GTG as start codon for genetic code 3 | |
| 17 -- Added Balanophoraceae plastid genetic code 32 | |
| 18 -- | |
| 19 -- Version 4.3 | |
| 20 -- Change to CTG -> Leu in genetic codes 27, 28, 29, 30 | |
| 21 -- | |
| 22 -- Version 4.2 | |
| 23 -- Added Karyorelict nuclear genetic code 27 | |
| 24 -- Added Condylostoma nuclear genetic code 28 | |
| 25 -- Added Mesodinium nuclear genetic code 29 | |
| 26 -- Added Peritrich nuclear genetic code 30 | |
| 27 -- Added Blastocrithidia nuclear genetic code 31 | |
| 28 -- | |
| 29 -- Version 4.1 | |
| 30 -- Added Pachysolen tannophilus nuclear genetic code 26 | |
| 31 -- | |
| 32 -- Version 4.0 | |
| 33 -- Updated version to reflect numerous undocumented changes: | |
| 34 -- Corrected start codons for genetic code 25 | |
| 35 -- Name of new genetic code is Candidate Division SR1 and Gracilibacteria | |
| 36 -- Added candidate division SR1 nuclear genetic code 25 | |
| 37 -- Added GTG as start codon for genetic code 24 | |
| 38 -- Corrected Pterobranchia Mitochondrial genetic code (24) | |
| 39 -- Added genetic code 24, Pterobranchia Mitochondrial | |
| 40 -- Genetic code 11 is now Bacterial, Archaeal and Plant Plastid | |
| 41 -- Fixed capitalization of mitochondrial in codes 22 and 23 | |
| 42 -- Added GTG, ATA, and TTG as alternative start codons to code 13 | |
| 43 -- | |
| 44 -- Version 3.9 | |
| 45 -- Code 14 differs from code 9 only by translating UAA to Tyr rather than | |
| 46 -- STOP. A recent study (Telford et al, 2000) has found no evidence that | |
| 47 -- the codon UAA codes for Tyr in the flatworms, but other opinions exist. | |
| 48 -- There are very few GenBank records that are translated with code 14, | |
| 49 -- but a test translation shows that retranslating these records with code | |
| 50 -- 9 can cause premature terminations. Therefore, GenBank will maintain | |
| 51 -- code 14 until further information becomes available. | |
| 52 -- | |
| 53 -- Version 3.8 | |
| 54 -- Added GTG start to Echinoderm mitochondrial code, code 9 | |
| 55 -- | |
| 56 -- Version 3.7 | |
| 57 -- Added code 23 Thraustochytrium mitochondrial code | |
| 58 -- formerly OGMP code 93 | |
| 59 -- submitted by Gertraude Berger, Ph.D. | |
| 60 -- | |
| 61 -- Version 3.6 | |
| 62 -- Added code 22 TAG-Leu, TCA-stop | |
| 63 -- found in mitochondrial DNA of Scenedesmus obliquus | |
| 64 -- submitted by Gertraude Berger, Ph.D. | |
| 65 -- Organelle Genome Megasequencing Program, Univ Montreal | |
| 66 -- | |
| 67 -- Version 3.5 | |
| 68 -- Added code 21, Trematode Mitochondrial | |
| 69 -- (as deduced from: Garey & Wolstenholme,1989; Ohama et al, 1990) | |
| 70 -- Added code 16, Chlorophycean Mitochondrial | |
| 71 -- (TAG can translated to Leucine instaed to STOP in chlorophyceans | |
| 72 -- and fungi) | |
| 73 -- | |
| 74 -- Version 3.4 | |
| 75 -- Added CTG,TTG as allowed alternate start codons in Standard code. | |
| 76 -- Prats et al. 1989, Hann et al. 1992 | |
| 77 -- | |
| 78 -- Version 3.3 - 10/13/95 | |
| 79 -- Added alternate intiation codon ATC to code 5 | |
| 80 -- based on complete mitochondrial genome of honeybee | |
| 81 -- Crozier and Crozier (1993) | |
| 82 -- | |
| 83 -- Version 3.2 - 6/24/95 | |
| 84 -- Code Comments | |
| 85 -- 10 Alternative Ciliate Macronuclear renamed to Euplotid Macro... | |
| 86 -- 15 Blepharisma Macro.. code added | |
| 87 -- 5 Invertebrate Mito.. GTG allowed as alternate initiator | |
| 88 -- 11 Eubacterial renamed to Bacterial as most alternate starts | |
| 89 -- have been found in Archea | |
| 90 -- | |
| 91 -- | |
| 92 -- Version 3.1 - 1995 | |
| 93 -- Updated as per Andrzej Elzanowski at NCBI | |
| 94 -- Complete documentation in NCBI toolkit documentation | |
| 95 -- Note: 2 genetic codes have been deleted | |
| 96 -- | |
| 97 -- Old id Use id - Notes | |
| 98 -- | |
| 99 -- id 7 id 4 - Kinetoplast code now merged in code id 4 | |
| 100 -- id 8 id 1 - all plant chloroplast differences due to RNA edit | |
| 101 -- | |
| 102 -- | |
| 103 --************************************************************************* | |
| 104 | |
| 105 Genetic-code-table ::= { | |
| 106 { | |
| 107 name "Standard" , | |
| 108 name "SGC0" , | |
| 109 id 1 , | |
| 110 ncbieaa "FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 111 sncbieaa "---M------**--*----M---------------M----------------------------" | |
| 112 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 113 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 114 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 115 }, | |
| 116 { | |
| 117 name "Vertebrate Mitochondrial" , | |
| 118 name "SGC1" , | |
| 119 id 2 , | |
| 120 ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSS**VVVVAAAADDEEGGGG", | |
| 121 sncbieaa "----------**--------------------MMMM----------**---M------------" | |
| 122 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 123 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 124 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 125 }, | |
| 126 { | |
| 127 name "Yeast Mitochondrial" , | |
| 128 name "SGC2" , | |
| 129 id 3 , | |
| 130 ncbieaa "FFLLSSSSYY**CCWWTTTTPPPPHHQQRRRRIIMMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 131 sncbieaa "----------**----------------------MM---------------M------------" | |
| 132 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 133 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 134 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 135 }, | |
| 136 { | |
| 137 name "Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate | |
| 138 Mitochondrial; Mycoplasma; Spiroplasma" , | |
| 139 name "SGC3" , | |
| 140 id 4 , | |
| 141 ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 142 sncbieaa "--MM------**-------M------------MMMM---------------M------------" | |
| 143 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 144 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 145 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 146 }, | |
| 147 { | |
| 148 name "Invertebrate Mitochondrial" , | |
| 149 name "SGC4" , | |
| 150 id 5 , | |
| 151 ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSSSVVVVAAAADDEEGGGG", | |
| 152 sncbieaa "---M------**--------------------MMMM---------------M------------" | |
| 153 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 154 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 155 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 156 }, | |
| 157 { | |
| 158 name "Ciliate Nuclear; Dasycladacean Nuclear; Hexamita Nuclear" , | |
| 159 name "SGC5" , | |
| 160 id 6 , | |
| 161 ncbieaa "FFLLSSSSYYQQCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 162 sncbieaa "--------------*--------------------M----------------------------" | |
| 163 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 164 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 165 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 166 }, | |
| 167 { | |
| 168 name "Echinoderm Mitochondrial; Flatworm Mitochondrial" , | |
| 169 name "SGC8" , | |
| 170 id 9 , | |
| 171 ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG", | |
| 172 sncbieaa "----------**-----------------------M---------------M------------" | |
| 173 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 174 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 175 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 176 }, | |
| 177 { | |
| 178 name "Euplotid Nuclear" , | |
| 179 name "SGC9" , | |
| 180 id 10 , | |
| 181 ncbieaa "FFLLSSSSYY**CCCWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 182 sncbieaa "----------**-----------------------M----------------------------" | |
| 183 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 184 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 185 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 186 }, | |
| 187 { | |
| 188 name "Bacterial, Archaeal and Plant Plastid" , | |
| 189 id 11 , | |
| 190 ncbieaa "FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 191 sncbieaa "---M------**--*----M------------MMMM---------------M------------" | |
| 192 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 193 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 194 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 195 }, | |
| 196 { | |
| 197 name "Alternative Yeast Nuclear" , | |
| 198 id 12 , | |
| 199 ncbieaa "FFLLSSSSYY**CC*WLLLSPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 200 sncbieaa "----------**--*----M---------------M----------------------------" | |
| 201 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 202 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 203 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 204 }, | |
| 205 { | |
| 206 name "Ascidian Mitochondrial" , | |
| 207 id 13 , | |
| 208 ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSGGVVVVAAAADDEEGGGG", | |
| 209 sncbieaa "---M------**----------------------MM---------------M------------" | |
| 210 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 211 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 212 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 213 }, | |
| 214 { | |
| 215 name "Alternative Flatworm Mitochondrial" , | |
| 216 id 14 , | |
| 217 ncbieaa "FFLLSSSSYYY*CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG", | |
| 218 sncbieaa "-----------*-----------------------M----------------------------" | |
| 219 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 220 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 221 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 222 } , | |
| 223 { | |
| 224 name "Blepharisma Macronuclear" , | |
| 225 id 15 , | |
| 226 ncbieaa "FFLLSSSSYY*QCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 227 sncbieaa "----------*---*--------------------M----------------------------" | |
| 228 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 229 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 230 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 231 } , | |
| 232 { | |
| 233 name "Chlorophycean Mitochondrial" , | |
| 234 id 16 , | |
| 235 ncbieaa "FFLLSSSSYY*LCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 236 sncbieaa "----------*---*--------------------M----------------------------" | |
| 237 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 238 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 239 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 240 } , | |
| 241 { | |
| 242 name "Trematode Mitochondrial" , | |
| 243 id 21 , | |
| 244 ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNNKSSSSVVVVAAAADDEEGGGG", | |
| 245 sncbieaa "----------**-----------------------M---------------M------------" | |
| 246 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 247 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 248 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 249 } , | |
| 250 { | |
| 251 name "Scenedesmus obliquus Mitochondrial" , | |
| 252 id 22 , | |
| 253 ncbieaa "FFLLSS*SYY*LCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 254 sncbieaa "------*---*---*--------------------M----------------------------" | |
| 255 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 256 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 257 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 258 } , | |
| 259 { | |
| 260 name "Thraustochytrium Mitochondrial" , | |
| 261 id 23 , | |
| 262 ncbieaa "FF*LSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 263 sncbieaa "--*-------**--*-----------------M--M---------------M------------" | |
| 264 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 265 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 266 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 267 } , | |
| 268 { | |
| 269 name "Rhabdopleuridae Mitochondrial" , | |
| 270 id 24 , | |
| 271 ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSSKVVVVAAAADDEEGGGG", | |
| 272 sncbieaa "---M------**-------M---------------M---------------M------------" | |
| 273 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 274 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 275 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 276 } , | |
| 277 { | |
| 278 name "Candidate Division SR1 and Gracilibacteria" , | |
| 279 id 25 , | |
| 280 ncbieaa "FFLLSSSSYY**CCGWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 281 sncbieaa "---M------**-----------------------M---------------M------------" | |
| 282 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 283 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 284 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 285 } , | |
| 286 { | |
| 287 name "Pachysolen tannophilus Nuclear" , | |
| 288 id 26 , | |
| 289 ncbieaa "FFLLSSSSYY**CC*WLLLAPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 290 sncbieaa "----------**--*----M---------------M----------------------------" | |
| 291 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 292 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 293 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 294 } , | |
| 295 { | |
| 296 name "Karyorelict Nuclear" , | |
| 297 id 27 , | |
| 298 ncbieaa "FFLLSSSSYYQQCCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 299 sncbieaa "--------------*--------------------M----------------------------" | |
| 300 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 301 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 302 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 303 } , | |
| 304 { | |
| 305 name "Condylostoma Nuclear" , | |
| 306 id 28 , | |
| 307 ncbieaa "FFLLSSSSYYQQCCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 308 sncbieaa "----------**--*--------------------M----------------------------" | |
| 309 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 310 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 311 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 312 } , | |
| 313 { | |
| 314 name "Mesodinium Nuclear" , | |
| 315 id 29 , | |
| 316 ncbieaa "FFLLSSSSYYYYCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 317 sncbieaa "--------------*--------------------M----------------------------" | |
| 318 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 319 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 320 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 321 } , | |
| 322 { | |
| 323 name "Peritrich Nuclear" , | |
| 324 id 30 , | |
| 325 ncbieaa "FFLLSSSSYYEECC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 326 sncbieaa "--------------*--------------------M----------------------------" | |
| 327 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 328 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 329 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 330 } , | |
| 331 { | |
| 332 name "Blastocrithidia Nuclear" , | |
| 333 id 31 , | |
| 334 ncbieaa "FFLLSSSSYYEECCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 335 sncbieaa "----------**-----------------------M----------------------------" | |
| 336 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 337 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 338 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 339 } , | |
| 340 { | |
| 341 name "Balanophoraceae Plastid" , | |
| 342 id 32 , | |
| 343 ncbieaa "FFLLSSSSYY*WCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", | |
| 344 sncbieaa "---M------*---*----M------------MMMM---------------M------------" | |
| 345 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 346 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 347 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 348 } , | |
| 349 { | |
| 350 name "Cephalodiscidae Mitochondrial" , | |
| 351 id 33 , | |
| 352 ncbieaa "FFLLSSSSYYY*CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSSKVVVVAAAADDEEGGGG", | |
| 353 sncbieaa "---M-------*-------M---------------M---------------M------------" | |
| 354 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG | |
| 355 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG | |
| 356 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG | |
| 357 } | |
| 358 } |