Mercurial > repos > iuc > recentrifuge
comparison test-data/kraken_test/test1_csv.log @ 4:12f0968f171c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/recentrifuge commit fbb5d7bb68cbb5f497cdda3c0697b21b046a8262
author | iuc |
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date | Thu, 25 Jan 2024 17:02:43 +0000 |
parents | fe733f05c2f8 |
children |
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3:b5407cc2bf51 | 4:12f0968f171c |
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1 | 1 |
2 =-= /home/pierre/anaconda3/envs/__recentrifuge@1.9.1/bin/rcf =-= v1.9.1 - Jun 2022 =-= by Jose Manuel Martà =-= | 2 =-= /home/pierre/miniconda3/envs/__recentrifuge@1.13.2/bin/rcf =-= v1.13.2 - Jan 2024 =-= by Jose Manuel Martà =-= |
3 | 3 |
4 [90mKraken .krk files to analyze:[0m ['input_dir/kraken_out.krk'] | 4 [90mKraken .krk files to analyze:[0m ['input_dir/kraken_out.krk'] |
5 [90mLoading NCBI nodes...[0m[92m OK! [0m | 5 [90mLoading NCBI nodes...[0m[92m OK! [0m |
6 [90mLoading NCBI names...[0m[92m OK! [0m | 6 [90mLoading NCBI names...[0m[92m OK! [0m |
7 [90mBuilding dict of parent to children taxa...[0m[92m OK! [0m | 7 [90mBuilding dict of parent to children taxa...[0m[92m OK! [0m |
20 [0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m | 20 [0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m |
21 Info:[0m 90 [90madditional seqs discarded ([0m90.909% [90mof accepted) | 21 Info:[0m 90 [90madditional seqs discarded ([0m90.909% [90mof accepted) |
22 [0m[93m | 22 [0m[93m |
23 Warning![0m 11 orphan taxids[90m (rerun with --debug for details) | 23 Warning![0m 11 orphan taxids[90m (rerun with --debug for details) |
24 [0minput_dir/kraken_out[94m sample [0m[92mOK! | 24 [0minput_dir/kraken_out[94m sample [0m[92mOK! |
25 [0m[90mLoad elapsed time: [0m0.00392[90m sec | 25 [0m[90mLoad elapsed time: [0m0.00283[90m sec |
26 [0m | 26 [0m |
27 [90m | 27 [90m |
28 Building the taxonomy multiple tree... [0m[92mOK![0m | 28 Building the taxonomy multiple tree... [0m[92mOK![0m |
29 [90mGenerating interactive plot ([0m[95moutput.rcf.html[0m[90m)... [0m[92mOK![0m | 29 [90mGenerating interactive plot ([0m[95moutput.rcf.html[0m[90m)... [0m[92mOK![0m |
30 [90mGenerating csv extra output ([0m[95m[output.rcf.]*.csv[0m[90m)... [0m[92mOK![0m | 30 [90mGenerating csv extra output ([0m[95m[output.rcf.]*.csv[0m[90m)... [0m[92mOK![0m |