comparison recentrifuge.xml @ 3:b5407cc2bf51 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/recentrifuge commit 96f8a533278b4b6394aebd7a8f537513b0d29b1a

2:824497684a1f

            </param>
            <param argument="--avoidcross" type="boolean" truevalue="--avoidcross" falsevalue="" label="Avoid cross analysis" help="Default: no"/>
        </section>
    <!-- Detailed more fine parameters -->
        <section name="more_advanced_option" title=" Fine tuning of algorithm parameters">
            <param name="ctrlminscore" argument="--ctrlminscore" type="integer" optional="true" value="0" label="Minimum score in control samples to pass the filter" help="Minimum score/confidence of the classification of a read in control samples to pass the quality filter; it defaults to minscore"/>
            <param name="ctrlmintaxa"  argument="--ctrlmintaxa"  type="integer" optional="true" value="0" label="Minimum taxa to avoid collapsing one level into the parent" help="If not specified a value will be automatically assigned"/>
            <param name="summary" argument="--summary" type="select" label="Add a summary of the analysis (default is Add)" help="Select to 'add' summary samples to other samples, or to 'only' show summary samples or to 'avoid' summaries at all">
                <option value="ADD" selected="true">Add</option>
                <option value="ONLY">Only</option>
                <option value="AVOID">Avoid</option>
            </param>
            <param argument="--takeoutroot" type="boolean" truevalue="--takeoutroot" falsevalue="" label="Remove counts directly assigned to the root level"/>

3:b5407cc2bf51

            </param>
            <param argument="--avoidcross" type="boolean" truevalue="--avoidcross" falsevalue="" label="Avoid cross analysis" help="Default: no"/>
        </section>
    <!-- Detailed more fine parameters -->
        <section name="more_advanced_option" title=" Fine tuning of algorithm parameters">
            <param argument="--ctrlminscore" type="integer" optional="true" value="0" label="Minimum score in control samples to pass the filter" help="Minimum score/confidence of the classification of a read in control samples to pass the quality filter; it defaults to minscore"/>
            <param argument="--ctrlmintaxa"  type="integer" optional="true" value="0" label="Minimum taxa to avoid collapsing one level into the parent" help="If not specified a value will be automatically assigned"/>
            <param argument="--summary" type="select" label="Add a summary of the analysis (default is Add)" help="Select to 'add' summary samples to other samples, or to 'only' show summary samples or to 'avoid' summaries at all">
                <option value="ADD" selected="true">Add</option>
                <option value="ONLY">Only</option>
                <option value="AVOID">Avoid</option>
            </param>
            <param argument="--takeoutroot" type="boolean" truevalue="--takeoutroot" falsevalue="" label="Remove counts directly assigned to the root level"/>