Mercurial > repos > iuc > recentrifuge
view test-data/kraken_test/test1_csv.log @ 6:d4fbfd31696c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/recentrifuge commit 42b2d78b4badb653e84e15de35024368d48fce9b
| author | iuc |
|---|---|
| date | Mon, 29 Jul 2024 07:03:15 +0000 |
| parents | 12f0968f171c |
| children |
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=-= /home/pierre/miniconda3/envs/__recentrifuge@1.13.2/bin/rcf =-= v1.13.2 - Jan 2024 =-= by Jose Manuel Martà =-= [90mKraken .krk files to analyze:[0m ['input_dir/kraken_out.krk'] [90mLoading NCBI nodes...[0m[92m OK! [0m [90mLoading NCBI names...[0m[92m OK! [0m [90mBuilding dict of parent to children taxa...[0m[92m OK! [0m [90m Please, wait, processing files in parallel... [0m [90mLoading output file input_dir/kraken_out.krk... [0m[92mOK! [0m[90m Seqs read: [0m99 [90m[[0m52.81 knt[90m] [0m[90m Seqs clas: [0m99 [90m([0m0.00%[90m unclassified) [0m[90m Seqs pass: [0m99 [90m([0m0.00%[90m rejected) [0m[90m Scores SHEL: min = [0m36.0,[90m max = [0m347.0,[90m avr = [0m99.9 [90m Coverage(%): min = [0m0.2,[90m max = [0m88.1,[90m avr = [0m15.4 [90m Read length: min = [0m198 nt,[90m max = [0m602 nt,[90m avr = [0m533 nt [90m TaxIds: by classifier = [0m13[90m, by filter = [0m13 [90mBuilding from raw data with mintaxa = [0m2[90m ... [0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m Info:[0m 90 [90madditional seqs discarded ([0m90.909% [90mof accepted) [0m[93m Warning![0m 11 orphan taxids[90m (rerun with --debug for details) [0minput_dir/kraken_out[94m sample [0m[92mOK! [0m[90mLoad elapsed time: [0m0.00283[90m sec [0m [90m Building the taxonomy multiple tree... [0m[92mOK![0m [90mGenerating interactive plot ([0m[95moutput.rcf.html[0m[90m)... [0m[92mOK![0m [90mGenerating csv extra output ([0m[95m[output.rcf.]*.csv[0m[90m)... [0m[92mOK![0m [90mTotal elapsed time:[0m 00:00:00