Mercurial > repos > iuc > resize_coordinate_window
comparison resize_coordinate_window.xml @ 3:9ba78e8985dc draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/resize_coordinate_window commit ad3846c086321d9bd604e974fd21323347b73470
author | iuc |
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date | Mon, 10 Jul 2017 11:47:19 -0400 |
parents | 0164d2edba9f |
children | 4eb3cc1f8466 |
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2:541f300f322d | 3:9ba78e8985dc |
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1 <tool id="resize_coordinate_window" name="Resize coordinate window" version="1.0.1"> | 1 <tool id="resize_coordinate_window" name="Resize coordinate window" version="1.0.1"> |
2 <description>of GFF data</description> | 2 <description>of GFF data</description> |
3 <command> | 3 <command detect_errors="exit_code"><![CDATA[ |
4 python $__tool_directory__/resize_coordinate_window.py | 4 python '$__tool_directory__/resize_coordinate_window.py' |
5 --input "$input" | 5 --input '$input' |
6 --start_coordinate $start_coordinate | 6 --start_coordinate $start_coordinate |
7 --subtract_from_start $subtract_from_start | 7 --subtract_from_start $subtract_from_start |
8 --add_to_end $add_to_end | 8 --add_to_end $add_to_end |
9 --extend_existing $extend_existing | 9 --extend_existing $extend_existing |
10 --chrom_len_file ${chromInfo} | 10 --chrom_len_file '${chromInfo}' |
11 --region_boundaries $region_boundaries | 11 --region_boundaries $region_boundaries |
12 --output "$output" | 12 --output '$output' |
13 </command> | 13 ]]></command> |
14 <inputs> | 14 <inputs> |
15 <param name="input" type="data" format="gff" label="Gff file" /> | 15 <param name="input" type="data" format="gff" label="Gff file" /> |
16 <param name="start_coordinate" type="select" label="Start coordinate" help="Input data is 0-based or 1-based"> | 16 <param name="start_coordinate" type="select" label="Start coordinate" help="Input data is 0-based or 1-based"> |
17 <option value="0" selected="True">0</option> | 17 <option value="0" selected="True">0</option> |
18 <option value="1">1</option> | 18 <option value="1">1</option> |