# HG changeset patch
# User iuc
# Date 1499701639 14400
# Node ID 9ba78e8985dc8569fc2f15e904c54cd1122b63c7
# Parent  541f300f322ded53adb923af40c590e18be2ed22
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/resize_coordinate_window commit ad3846c086321d9bd604e974fd21323347b73470

diff -r 541f300f322d -r 9ba78e8985dc resize_coordinate_window.py
--- a/resize_coordinate_window.py	Mon Nov 14 14:04:00 2016 -0500
+++ b/resize_coordinate_window.py	Mon Jul 10 11:47:19 2017 -0400
@@ -10,6 +10,7 @@
     sys.stderr.write(msg)
     sys.exit(1)
 
+
 parser = argparse.ArgumentParser()
 parser.add_argument('--input', dest='input', help="Input dataset")
 parser.add_argument('--start_coordinate', dest='start_coordinate', type=int, help='Chromosome start coordinate, either 0 or 1.')
diff -r 541f300f322d -r 9ba78e8985dc resize_coordinate_window.xml
--- a/resize_coordinate_window.xml	Mon Nov 14 14:04:00 2016 -0500
+++ b/resize_coordinate_window.xml	Mon Jul 10 11:47:19 2017 -0400
@@ -1,16 +1,16 @@
 <tool id="resize_coordinate_window" name="Resize coordinate window" version="1.0.1">
     <description>of GFF data</description>
-    <command>
-        python $__tool_directory__/resize_coordinate_window.py
-        --input "$input"
-        --start_coordinate $start_coordinate
-        --subtract_from_start $subtract_from_start
-        --add_to_end $add_to_end
-        --extend_existing $extend_existing
-        --chrom_len_file ${chromInfo}
-        --region_boundaries $region_boundaries
-        --output "$output"
-    </command>
+    <command detect_errors="exit_code"><![CDATA[
+python '$__tool_directory__/resize_coordinate_window.py'
+--input '$input'
+--start_coordinate $start_coordinate
+--subtract_from_start $subtract_from_start
+--add_to_end $add_to_end
+--extend_existing $extend_existing
+--chrom_len_file '${chromInfo}'
+--region_boundaries $region_boundaries
+--output '$output'
+    ]]></command>
     <inputs>
         <param name="input" type="data" format="gff" label="Gff file" />
         <param name="start_coordinate" type="select" label="Start coordinate" help="Input data is 0-based or 1-based">