Mercurial > repos > iuc > resize_coordinate_window
changeset 4:4eb3cc1f8466 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/resize_coordinate_window commit d357611d8d49631f0eb7c5e022e80cb4c9483308"
| author | iuc |
|---|---|
| date | Wed, 11 Dec 2019 18:06:42 -0500 |
| parents | 9ba78e8985dc |
| children | |
| files | resize_coordinate_window.py resize_coordinate_window.xml |
| diffstat | 2 files changed, 10 insertions(+), 6 deletions(-) [+] |
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--- a/resize_coordinate_window.py Mon Jul 10 11:47:19 2017 -0400 +++ b/resize_coordinate_window.py Wed Dec 11 18:06:42 2019 -0500 @@ -1,3 +1,5 @@ + + import argparse import fileinput import sys @@ -7,8 +9,7 @@ def stop_err(msg): - sys.stderr.write(msg) - sys.exit(1) + sys.exit(msg) parser = argparse.ArgumentParser() @@ -23,7 +24,7 @@ args = parser.parse_args() extend_existing = args.extend_existing == 'existing' -out = open(args.output, 'wb') +out = open(args.output, 'w') chrom_start = int(args.start_coordinate) chrom_lens = dict() @@ -84,6 +85,6 @@ out.close() if len_file_error is not None: - print "All chrom lengths set to %d, error in chrom len file: %s" % (MAX_CHROM_LEN, len_file_error) + print("All chrom lengths set to %d, error in chrom len file: %s" % (MAX_CHROM_LEN, len_file_error)) if len_file_missing: - print "All chrom lengths set to %d, chrom len files are not installed." % MAX_CHROM_LEN + print("All chrom lengths set to %d, chrom len files are not installed." % MAX_CHROM_LEN)
--- a/resize_coordinate_window.xml Mon Jul 10 11:47:19 2017 -0400 +++ b/resize_coordinate_window.xml Wed Dec 11 18:06:42 2019 -0500 @@ -1,5 +1,8 @@ -<tool id="resize_coordinate_window" name="Resize coordinate window" version="1.0.1"> +<tool id="resize_coordinate_window" name="Resize coordinate window" version="1.0.2"> <description>of GFF data</description> + <requirements> + <requirement type="package" version="3.8.0">python</requirement> + </requirements> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/resize_coordinate_window.py' --input '$input'