Mercurial > repos > iuc > rgrnastar
comparison test-data/test-cache/tophat-test/genomeParameters.txt @ 15:5ec75f5dae3c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit a8e319862d723654c372a6d71e5de76e052586a9"
author | iuc |
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date | Wed, 05 Aug 2020 09:40:33 -0400 |
parents | d82339e37e8e |
children |
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14:b9e04854e2bb | 15:5ec75f5dae3c |
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1 ### STAR --runMode genomeGenerate --genomeDir test-cache/tophat_test/ --genomeFastaFiles tophat_test.fa --genomeSAindexNbases 5 | 1 ### STAR --runMode genomeGenerate --genomeDir tempstargenomedir --genomeFastaFiles tools/rgrnastar/test-data/tophat_test.fa --genomeSAindexNbases 5 |
2 ### GstrandBit 32 | 2 ### GstrandBit 32 |
3 versionGenome 2.7.1a | 3 versionGenome 2.7.4a |
4 genomeFastaFiles tophat_test.fa | 4 genomeType Full |
5 genomeFastaFiles tools/rgrnastar/test-data/tophat_test.fa | |
5 genomeSAindexNbases 5 | 6 genomeSAindexNbases 5 |
6 genomeChrBinNbits 18 | 7 genomeChrBinNbits 18 |
7 genomeSAsparseD 1 | 8 genomeSAsparseD 1 |
9 genomeTransformType None | |
10 genomeTransformVCF - | |
8 sjdbOverhang 0 | 11 sjdbOverhang 0 |
9 sjdbFileChrStartEnd - | 12 sjdbFileChrStartEnd - |
10 sjdbGTFfile - | 13 sjdbGTFfile - |
11 sjdbGTFchrPrefix - | 14 sjdbGTFchrPrefix - |
12 sjdbGTFfeatureExon exon | 15 sjdbGTFfeatureExon exon |