Mercurial > repos > iuc > rgrnastar

view macros.xml @ 7:a70a7eebb435 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 998444037eb7fc93c5dc1441f9c2aecca4b03a7c
author iuc
date Wed, 16 May 2018 17:31:03 -0400
parents 318b2a9d54dd
children d5659efd66aa
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<macros>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="2.6.0b">star</requirement>
            <requirement type="package" version="1.8">samtools</requirement>
        </requirements>
    </xml>
    <token name="@FASTQ_GZ_OPTION@">
        --readFilesCommand zcat
    </token>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1093/bioinformatics/bts635</citation>
        </citations>
    </xml>
    <xml name="@SJDBOPTIONS@">
         <param argument="--sjdbGTFfile" type="data" format="gff3,gtf" label="Gene model (gff3,gtf) file for splice junctions" optional="true" help="Exon junction information for mapping splices"/>
         <param argument="--sjdbOverhang" type="integer" min="1" value="100" label="Length of the genomic sequence around annotated junctions" help="Used in constructing the splice junctions database. Ideal value is ReadLength-1"/>
    </xml>
</macros>