annotate test-data/rnastar_test.log @ 20:45795f582ae9 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
author iuc
date Tue, 27 Aug 2024 14:11:53 +0000
parents e3c94e2933c9
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
e3c94e2933c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 686574b0392e554b75035a9b79bc919dfda9ab97"
iuc
parents:
diff changeset
1 Started job on | .*
e3c94e2933c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 686574b0392e554b75035a9b79bc919dfda9ab97"
iuc
parents:
diff changeset
2 Started mapping on | .*
e3c94e2933c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 686574b0392e554b75035a9b79bc919dfda9ab97"
iuc
parents:
diff changeset
3 Finished on | .*
e3c94e2933c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 686574b0392e554b75035a9b79bc919dfda9ab97"
iuc
parents:
diff changeset
4 Mapping speed, Million of reads per hour | .*
e3c94e2933c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 686574b0392e554b75035a9b79bc919dfda9ab97"
iuc
parents:
diff changeset
5
20
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
6 Number of input reads | 15447
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
7 Average input read length | 119
0
e3c94e2933c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 686574b0392e554b75035a9b79bc919dfda9ab97"
iuc
parents:
diff changeset
8 UNIQUE READS:
20
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
9 Uniquely mapped reads number | 150
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
10 Uniquely mapped reads % | 0.97%
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
11 Average mapped length | 105.11
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
12 Number of splices: Total | 131
0
e3c94e2933c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 686574b0392e554b75035a9b79bc919dfda9ab97"
iuc
parents:
diff changeset
13 Number of splices: Annotated (sjdb) | 0
20
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
14 Number of splices: GT/AG | 100
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
15 Number of splices: GC/AG | 6
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
16 Number of splices: AT/AC | 1
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
17 Number of splices: Non-canonical | 24
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
18 Mismatch rate per base, % | 6.68%
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
19 Deletion rate per base | 0.04%
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
20 Deletion average length | 1.17
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
21 Insertion rate per base | 0.04%
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
22 Insertion average length | 1.50
0
e3c94e2933c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 686574b0392e554b75035a9b79bc919dfda9ab97"
iuc
parents:
diff changeset
23 MULTI-MAPPING READS:
20
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
24 Number of reads mapped to multiple loci | 451
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
25 % of reads mapped to multiple loci | 2.92%
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
26 Number of reads mapped to too many loci | 58
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
27 % of reads mapped to too many loci | 0.38%
0
e3c94e2933c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 686574b0392e554b75035a9b79bc919dfda9ab97"
iuc
parents:
diff changeset
28 UNMAPPED READS:
20
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
29 Number of reads unmapped: too many mismatches | 0
0
e3c94e2933c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 686574b0392e554b75035a9b79bc919dfda9ab97"
iuc
parents:
diff changeset
30 % of reads unmapped: too many mismatches | 0.00%
20
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
31 Number of reads unmapped: too short | 7912
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
32 % of reads unmapped: too short | 51.22%
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
33 Number of reads unmapped: other | 6876
45795f582ae9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 0
diff changeset
34 % of reads unmapped: other | 44.51%
0
e3c94e2933c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 686574b0392e554b75035a9b79bc919dfda9ab97"
iuc
parents:
diff changeset
35 CHIMERIC READS:
e3c94e2933c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 686574b0392e554b75035a9b79bc919dfda9ab97"
iuc
parents:
diff changeset
36 Number of chimeric reads | 0
e3c94e2933c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 686574b0392e554b75035a9b79bc919dfda9ab97"
iuc
parents:
diff changeset
37 % of chimeric reads | 0.00%