Mercurial > repos > iuc > rna_starsolo

comparison macros.xml @ 8:00fbfac99d39 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 9c34fd08b619a09028707a52c868d9be1ca02a6b"
author iuc
date Fri, 04 Dec 2020 22:05:36 +0000
parents e403d27e8f24
children ec9cbd6b9a49
comparison
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7:e403d27e8f24 8:00fbfac99d39
3 whenever you make changes to the following two version tokens! 3 whenever you make changes to the following two version tokens!
4 The data manager uses a symlink to this macro file to keep the STAR and 4 The data manager uses a symlink to this macro file to keep the STAR and
5 the index versions in sync, but you should manually adjust the +galaxy 5 the index versions in sync, but you should manually adjust the +galaxy
6 version number. --> 6 version number. -->
7 <!-- STAR version to be used --> 7 <!-- STAR version to be used -->
8 <token name="@VERSION@">2.7.5b</token> 8 <token name="@VERSION@">2.7.6a</token>
9 <!-- STAR index version compatible with this version of STAR 9 <!-- STAR index version compatible with this version of STAR
10 This is the STAR version that introduced the index structure expected 10 This is the STAR version that introduced the index structure expected
11 by the current version. 11 by the current version.
12 It can be found for any specific version of STAR with: 12 It can be found for any specific version of STAR with:
13 STAR -h | grep versionGenome 13 STAR -h | grep versionGenome
22 <requirement type="package" version="1.9">samtools</requirement> 22 <requirement type="package" version="1.9">samtools</requirement>
23 <yield /> 23 <yield />
24 </requirements> 24 </requirements>
25 </xml> 25 </xml>
26 26
27 <xml name="edam">
28 <edam_topics>
29 <edam_topic>topic_3170</edam_topic>
30 <edam_topic>topic_3308</edam_topic>
31 </edam_topics>
32 <edam_operations>
33 <edam_operation>operation_0292</edam_operation>
34 </edam_operations>
35 </xml>
36
27 <xml name="index_selection" token_with_gene_model="0"> 37 <xml name="index_selection" token_with_gene_model="0">
28 <param argument="--genomeDir" name="genomeDir" type="select" 38 <param argument="--genomeDir" name="genomeDir" type="select"
29 label="Select reference genome" 39 label="Select reference genome"
30 help="If your genome of interest is not listed, contact the Galaxy team"> 40 help="If your genome of interest is not listed, contact the Galaxy team">
31 <options from_data_table="@IDX_DATA_TABLE@"> 41 <options from_data_table="@IDX_DATA_TABLE@">