Mercurial > repos > iuc > rna_starsolo
comparison macros.xml @ 6:178bdbdb6d24 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 57f71aa633a43ab02bbf05acd0c6d7f406e01f1e"
| author | iuc |
|---|---|
| date | Thu, 28 Nov 2019 15:55:47 -0500 |
| parents | 61cb2042581a |
| children | e403d27e8f24 |
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| 5:c23da6257d6a | 6:178bdbdb6d24 |
|---|---|
| 1 <macros> | 1 <macros> |
| 2 <!-- REMEMBER to bump the version of rna_star_index_builder_data_manager | 2 <!-- REMEMBER to bump the version of rna_star_index_builder_data_manager |
| 3 whenever you make changes to the following two version tokens! | 3 whenever you make changes to the following two version tokens! |
| 4 The data manager uses a symlink to this macro file to keep the versions in | 4 The data manager uses a symlink to this macro file to keep the STAR and |
| 5 sync. --> | 5 the index versions in sync, but you should manually adjust the +galaxy |
| 6 version number. --> | |
| 6 <!-- STAR version to be used --> | 7 <!-- STAR version to be used --> |
| 7 <token name="@VERSION@">2.7.2b</token> | 8 <token name="@VERSION@">2.7.2b</token> |
| 8 <!-- STAR index version compatible with this version of STAR | 9 <!-- STAR index version compatible with this version of STAR |
| 9 This is the STAR version that introduced the index structure expected | 10 This is the STAR version that introduced the index structure expected |
| 10 by the current version. | 11 by the current version. |
| 16 | 17 |
| 17 <xml name="requirements"> | 18 <xml name="requirements"> |
| 18 <requirements> | 19 <requirements> |
| 19 <requirement type="package" version="@VERSION@">star</requirement> | 20 <requirement type="package" version="@VERSION@">star</requirement> |
| 20 <requirement type="package" version="1.9">samtools</requirement> | 21 <requirement type="package" version="1.9">samtools</requirement> |
| 22 <yield /> | |
| 21 </requirements> | 23 </requirements> |
| 22 </xml> | 24 </xml> |
| 23 | 25 |
| 24 <xml name="index_selection" token_with_gene_model="0"> | 26 <xml name="index_selection" token_with_gene_model="0"> |
| 25 <param argument="--genomeDir" name="genomeDir" type="select" | 27 <param argument="--genomeDir" name="genomeDir" type="select" |