diff macros.xml @ 1:e613048778d9 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2911002ccd79fe062f6346ee5699ea262f92f04f"
author iuc
date Sat, 17 Aug 2019 09:37:54 -0400
parents e3c94e2933c9
children 3a1253ee137b
line wrap: on
line diff
--- a/macros.xml	Thu Aug 15 01:53:49 2019 -0400
+++ b/macros.xml	Sat Aug 17 09:37:54 2019 -0400
@@ -21,7 +21,7 @@
         </requirements>
     </xml>
 
-    <xml name="index_selection" token_with_gene_model="1">
+    <xml name="index_selection" token_with_gene_model="0">
         <param argument="--genomeDir" name="genomeDir" type="select"
         label="Select reference genome"
         help="If your genome of interest is not listed, contact the Galaxy team">
@@ -127,15 +127,15 @@
                     <param name="GTFselect" type="select"
                            label="Reference genome with or without an annotation"
                            help="Select the '... with builtin gene-model' option to select from the list of available indexes that were built with splice junction information. Select the '... without builtin gene-model' option to select from the list of available indexes without annotated splice junctions.">
-                        <option value="without-gtf">use genome reference with builtin gene-model</option>
-                        <option value="with-gtf">use genome reference without builtin gene-model</option>
+                        <option value="without-gtf" selected='true'>use genome reference without builtin gene-model</option>
+                        <option value="with-gtf">use genome reference with builtin gene-model</option>
                     </param>
                     <when value="with-gtf">
-                        <expand macro="index_selection" with_gene_model="0" />
+                        <expand macro="index_selection" with_gene_model="1" />
                         <expand macro="@SJDBOPTIONS@" />
                     </when>
                     <when value="without-gtf">
-                        <expand macro="index_selection" with_gene_model="1" />
+                        <expand macro="index_selection" with_gene_model="0" />
                     </when>
                 </conditional>
             </when>