# HG changeset patch
# User iuc
# Date 1596634882 14400
# Node ID e403d27e8f249b917e14a70f03c9fe5e9834f26b
# Parent  178bdbdb6d249c902a094714675ce8436c619cd4
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit a8e319862d723654c372a6d71e5de76e052586a9"

diff -r 178bdbdb6d24 -r e403d27e8f24 macros.xml
--- a/macros.xml	Thu Nov 28 15:55:47 2019 -0500
+++ b/macros.xml	Wed Aug 05 09:41:22 2020 -0400
@@ -5,7 +5,7 @@
     the index versions in sync, but you should manually adjust the +galaxy
     version number. -->
     <!-- STAR version to be used -->
-    <token name="@VERSION@">2.7.2b</token>
+    <token name="@VERSION@">2.7.5b</token>
     <!-- STAR index version compatible with this version of STAR
     This is the STAR version that introduced the index structure expected
     by the current version.
@@ -13,7 +13,8 @@
     STAR -h | grep versionGenome
     or by looking for the versionGenome parameter in source/parametersDefault
     of STAR's source code -->
-    <token name="@IDX_VERSION@">2.7.1a</token>
+    <token name="@IDX_VERSION@">2.7.4a</token>
+    <token name="@IDX_DATA_TABLE@">rnastar_index2x_versioned</token>
 
     <xml name="requirements">
         <requirements>
@@ -27,7 +28,7 @@
         <param argument="--genomeDir" name="genomeDir" type="select"
         label="Select reference genome"
         help="If your genome of interest is not listed, contact the Galaxy team">
-            <options from_data_table="rnastar_index2_versioned">
+            <options from_data_table="@IDX_DATA_TABLE@">
                 <filter type="static_value" column="4" value="@WITH_GENE_MODEL@" />
                 <filter type="static_value" column="5" value="@IDX_VERSION@" />
                 <filter type="sort_by" column="2" />
@@ -53,7 +54,7 @@
             <conditional name="refGenomeSource.geneSource">
                 <when value="indexed">
                     <action type="metadata" name="dbkey">
-                        <option type="from_data_table" name="rnastar_index2_versioned" column="1" offset="0">
+                        <option type="from_data_table" name="@IDX_DATA_TABLE@" column="1" offset="0">
                             <filter type="param_value" column="0" value="#" compare="startswith" keep="False"/>
                             <filter type="param_value" ref="refGenomeSource.GTFconditional.genomeDir" column="0"/>
                         </option>
@@ -76,10 +77,21 @@
             --genomeDir 'tempstargenomedir'
             --genomeFastaFiles '${refGenomeSource.genomeFastaFiles}'
             ## Handle difference between indices with/without annotations
-            #if str($refGenomeSource.GTFconditional.GTFselect) == 'with-gtf':
-                --sjdbOverhang '${refGenomeSource.GTFconditional.sjdbOverhang}'
-                --sjdbGTFfile '${refGenomeSource.GTFconditional.sjdbGTFfile}'
-                #if str($refGenomeSource.GTFconditional.sjdbGTFfile.ext) == 'gff3':
+            #if 'GTFconditional' in $refGenomeSource:
+                ## GTFconditional exists only in STAR, but not STARsolo
+                #if str($refGenomeSource.GTFconditional.GTFselect) == 'with-gtf':
+                    --sjdbOverhang '${refGenomeSource.GTFconditional.sjdbOverhang}'
+                    --sjdbGTFfile '${refGenomeSource.GTFconditional.sjdbGTFfile}'
+                    #if str($refGenomeSource.GTFconditional.sjdbGTFfile.ext) == 'gff3':
+                        --sjdbGTFtagExonParentTranscript Parent
+                    #end if
+                #end if
+            #else:
+                ## ref genome selection is less complex for STARsolo cause
+                ## with-gtf is mandatory there
+                --sjdbOverhang '${refGenomeSource.sjdbOverhang}'
+                --sjdbGTFfile '${refGenomeSource.sjdbGTFfile}'
+                #if str($refGenomeSource.sjdbGTFfile.ext) == 'gff3':
                     --sjdbGTFtagExonParentTranscript Parent
                 #end if
             #end if
@@ -110,6 +122,13 @@
         #end if
         #end if
         ]]></token>
+    <xml name="ref_selection">
+        <param argument="--genomeFastaFiles" type="data" format="fasta" label="Select a reference genome" />
+        <!-- Currently, this parameter is not exposed in the wrapper,
+             but used only in the tests to avoid excessive index sizes for
+             the tiny test genomes. -->
+        <param name="genomeSAindexNbases" type="hidden" value="" />
+    </xml>
     <xml name="stdio" >
         <stdio>
             <regex match="FATAL error" source="both" level="fatal"/>
@@ -119,48 +138,4 @@
             <yield />
         </stdio>
     </xml>
-    <xml name="refgenomehandling" >
-        <conditional name="refGenomeSource">
-            <param name="geneSource" type="select" label="Custom or built-in reference genome" help="Built-ins were indexed using default options">
-                <option value="indexed" selected="true">Use a built-in index</option>
-                <option value="history">Use reference genome from history and create temporary index</option>
-            </param>
-            <when value="indexed">
-                <conditional name="GTFconditional">
-                    <param name="GTFselect" type="select"
-                           label="Reference genome with or without an annotation"
-                           help="Select the '... with builtin gene-model' option to select from the list of available indexes that were built with splice junction information. Select the '... without builtin gene-model' option to select from the list of available indexes without annotated splice junctions.">
-                        <option value="without-gtf" selected='true'>use genome reference without builtin gene-model</option>
-                        <option value="with-gtf">use genome reference with builtin gene-model</option>
-                    </param>
-                    <when value="with-gtf">
-                        <expand macro="index_selection" with_gene_model="1" />
-                    </when>
-                    <when value="without-gtf">
-                        <expand macro="index_selection" with_gene_model="0" />
-                        <expand macro="@SJDBOPTIONS@" />
-                    </when>
-                </conditional>
-            </when>
-            <when value="history">
-                <param argument="--genomeFastaFiles" type="data" format="fasta" label="Select a reference genome" />
-                <!-- Currently, this parameter is not exposed in the wrapper,
-                     but used only in the tests to avoid excessive index sizes for
-                     the tiny test genomes. -->
-                <param name="genomeSAindexNbases" type="hidden" value="" />
-                <conditional name="GTFconditional">
-                    <param name="GTFselect" type="select"
-                           label="Build index with our without known splice junctions annotation"
-                           help="To build an index with known splice junctions annotated, you will have to provide a GTF or GFF3 dataset that describes the gene models (the location of genes, transcripts and exons) known for the reference genome.">
-                        <option value="without-gtf">build index without gene-model</option>
-                        <option value="with-gtf">build index with gene-model</option>
-                    </param>
-                    <when value="with-gtf">
-                        <expand macro="@SJDBOPTIONS@" optional="false"/>
-                    </when>
-                    <when value="without-gtf" />
-                </conditional>
-            </when>
-        </conditional>
-    </xml>
 </macros>
diff -r 178bdbdb6d24 -r e403d27e8f24 rg_rnaStarSolo.xml
--- a/rg_rnaStarSolo.xml	Thu Nov 28 15:55:47 2019 -0500
+++ b/rg_rnaStarSolo.xml	Wed Aug 05 09:41:22 2020 -0400
@@ -1,8 +1,7 @@
-<tool id="rna_starsolo" name="RNA STARSolo" version="@VERSION@@WRAPPER@" profile="17.01">
+<tool id="rna_starsolo" name="RNA STARSolo" version="@VERSION@" profile="17.01">
     <description>mapping, demultiplexing and gene quantification for single cell RNA-seq</description>
     <macros>
         <import>macros.xml</import>
-        <token name="@WRAPPER@">1</token>
     </macros>
     <expand macro="requirements"/>
     <expand macro="stdio" >
@@ -14,52 +13,34 @@
     STAR
     @REFGENOMEHANDLING@
 
+    --readFilesIn
     ## Check that the input pairs are of the same type
     ## otherwise STARsolo will run for a long time and then error out.
     ## We consume either repeats of two inputs R1 + R2
     ## or a collection of paired reads.
 
-    #try
-        #set $last = None
-        #for $x in $input_types.input_repeats:
-            #if str($input_types.use) == "repeat":
-                #set $r1 = $x.input1
-                #set $r2 = $x.input2
-            #elif str($input_types.use) == "list_paired":
-                #set $r1 = $x.forward
-                #set $r2 = $x.reverse
-            #else
-                Wrong Type
-                #stop
-            #end if
-
+    #if str($input_types.use) == "repeat":
+        #set $reads1 = []
+        #set $reads2 = []
+        #for $r1, $r2 in zip($input_types.input1, $input_types.input2):
             #assert $r1.datatype == $r2.datatype
-
-            ## Test that all pairs are of the same type
-            #if $last:
-                #assert $last.datatype == $r1.datatype
-            #end if
-            #set $last = $r1
+            #silent $reads1.append(str($r1))
+            #silent $reads2.append(str($r2))
         #end for
-    #except AssertionError
-        Input types are not the same!
-        #stop
-    #end try
+        #set $reads1 = ','.join($reads1)
+        #set $reads2 = ','.join($reads2)
+    #elif str($input_types.use) == "list_paired":
+        #set $r1 = $input_types.input_collection.forward
+        #set $r2 = $input_types.input_collection.reverse
+        #set $reads1 = $r1
+        #set $reads2 = $r2
+    #end if
 
     ## cDNA sequence(s) [R2] always go first, then barcode(s) [R1]
     ## see: Section 3.1 of STAR manual for multiple inputs, and Section 13 for STARsolo inputs
-    #if str($input_types.use) == "repeat":
-        #set $reads2 = ','.join([ '%s' % $x.input2 for $i,$x in enumerate($input_types.input_repeats)])
-        #set $reads1 = ','.join([ '%s' % $x.input1 for $i,$x in enumerate($input_types.input_repeats)])
-    #else if str($input_types.use) == "list_paired"
-        #set $reads2 = ','.join([ '%s' % $x.reverse for $i,$x in enumerate($input_types.input_repeats)])
-        #set $reads1 = ','.join([ '%s' % $x.forward for $i,$x in enumerate($input_types.input_repeats)])
-    #end if
-
-    --readFilesIn
     $reads2 $reads1
 
-    #if $last.is_of_type('fastq.gz', 'fastqsanger.gz'):
+    #if $r1.is_of_type('fastq.gz', 'fastqsanger.gz'):
         @FASTQ_GZ_OPTION@
     #end if
 
@@ -69,7 +50,7 @@
     ## 1 - check length of barcode, 0 - do not check
     ## Good for checking custom chemistries
     --soloCBwhitelist '$soloCBwhitelist'
-    --soloBarcodeReadLength '$solo.soloBarcodeReadLength'
+    --soloBarcodeReadLength $solo.soloBarcodeReadLength
 
     #if str($solo.params.chemistry) == "CR2":
     --soloCBstart 1
@@ -82,34 +63,80 @@
     --soloUMIstart 17
     --soloUMIlen 12
     #else if str($solo.params.chemistry) == "custom":
-    --soloCBstart '$solo.params.soloCBstart'
-    --soloCBlen '$solo.params.soloCBlen'
-    --soloUMIstart '$solo.params.soloUMIstart'
-    --soloUMIlen '$solo.params.soloUMIlen'
+    --soloCBstart $solo.params.soloCBstart
+    --soloCBlen $solo.params.soloCBlen
+    --soloUMIstart $solo.params.soloUMIstart
+    --soloUMIlen $solo.params.soloUMIlen
     #end if
 
-    --soloStrand '$solo.soloStrand'
-    --soloFeatures '$solo.soloFeatures'
-    --soloUMIdedup '$solo.soloUMIdedup'
+    --soloStrand $solo.soloStrand
+    --soloFeatures $solo.soloFeatures
+    --soloUMIdedup $solo.soloUMIdedup
+    --quantMode TranscriptomeSAM
+    --outSAMtype BAM Unsorted
+
+    ## BAM sorting (logic copied from samtools_sort wrapper)
+    ## choosing BAM SortedByCoord appeared once to give fewer reads
+    ## than BAM Unsorted followed by a samtools sort
+    ## so better go with the latter?
+
+    &&
+    ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+    addthreads=\${GALAXY_SLOTS:-2} && (( addthreads-- )) &&
+    ##compute the number of memory available to samtools sort (-m)
+    ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+    addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} &&
+    ((addmemory=addmemory*75/100)) &&
+    samtools sort -@ \$addthreads -m \$addmemory"M" -T "\${TMPDIR:-.}" -O bam -o '$output_BAM' Aligned.out.bam
+
     ]]></command>
     <inputs>
         <conditional name="input_types" >
             <param name="use" type="select" label="Input Type" >
-                <option value="repeat" >Single files</option>
-                <option value="list_paired" >List of Pairs</option>
+                <option value="repeat" >Separate barcode and cDNA reads</option>
+                <option value="list_paired" >Paired collection of barcode and cDNA reads</option>
             </param>
             <when value="repeat">
-                <repeat name="input_repeats" title="Input Pairs" min="1" >
-                    <param format="fastq,fasta,fastq.gz,fastqsanger.gz" name="input1" type="data" label="RNA-Seq FASTQ/FASTA file, Barcode reads"/>
-                    <param format="fastq,fasta,fastq.gz,fastqsanger.gz" name="input2" type="data" label="RNA-Seq FASTQ/FASTA file, cDNA reads"/>
-                </repeat>
+                <param format="fastq,fasta,fastq.gz,fastqsanger.gz" name="input1" type="data"  multiple="true"
+                label="RNA-Seq FASTQ/FASTA file, Barcode reads" />
+                <param format="fastq,fasta,fastq.gz,fastqsanger.gz" name="input2" type="data"  multiple="true"
+                label="RNA-Seq FASTQ/FASTA file, cDNA reads"/>
             </when>
             <when value="list_paired">
-                <param name="input_repeats" collection_type="paired" type="data_collection" format="fastq,fasta,fastq.gz,fastqsanger.gz" label="Collection of Pairs" />
+                <param name="input_collection" collection_type="paired" type="data_collection" format="fastq,fasta,fastq.gz,fastqsanger.gz" label="Collection of Pairs" />
             </when>
         </conditional>
         <param format="txt,tsv" argument="--soloCBwhitelist" type="data" label="RNA-Seq Cell Barcode Whitelist" />
-        <expand macro="refgenomehandling" />
+
+        <!-- Genome source. -->
+        <conditional name="refGenomeSource">
+            <param name="geneSource" type="select" label="Custom or built-in reference genome" help="Built-ins were indexed using default options">
+                <option value="indexed" selected="true">Use a built-in index</option>
+                <option value="history">Use reference genome from history and create temporary index</option>
+            </param>
+            <when value="indexed">
+                <conditional name="GTFconditional">
+                    <param name="GTFselect" type="select"
+                           label="Reference genome with or without an annotation"
+                           help="Select the '... with builtin gene-model' option to select from the list of available indexes that were built with splice junction information. Select the '... without builtin gene-model' option to select from the list of available indexes without annotated splice junctions, and provide your own splice junction annonations.">
+                        <option value="without-gtf" selected='true'>use genome reference without builtin gene-model</option>
+                        <option value="with-gtf">use genome reference with builtin gene-model</option>
+                    </param>
+                    <when value="with-gtf">
+                        <expand macro="index_selection" with_gene_model="1" />
+                    </when>
+                    <when value="without-gtf">
+                        <expand macro="index_selection" with_gene_model="0" />
+                        <expand macro="@SJDBOPTIONS@" optional="false" />
+                    </when>
+                </conditional>
+            </when>
+            <when value="history">
+                <expand macro="ref_selection" />
+                <expand macro="@SJDBOPTIONS@" optional="false"/>
+            </when>
+        </conditional>
+
         <section name="solo" title="Advanced Settings" expanded="true">
             <conditional name="params">
                 <param name="chemistry" type="select" label="Configure Chemistry Options">
@@ -148,82 +175,102 @@
         <data format="txt" name="output_log" label="${tool.name} on ${on_string}: log" from_work_dir="Log.final.out">
             <expand macro="dbKeyActions" />
         </data>
-        <data format="tsv" name="output_genes" label="${tool.name} on ${on_string}: Genes" from_work_dir="Solo.out/genes.tsv" />
-        <data format="tsv" name="output_barcodes" label="${tool.name} on ${on_string}: Barcodes" from_work_dir="Solo.out/barcodes.tsv" />
-        <data format="mtx" name="output_matrix" label="${tool.name} on ${on_string}: Matrix Gene Counts" from_work_dir="Solo.out/matrix.mtx" >
+        <data format="tsv" name="output_genes" label="${tool.name} on ${on_string}: Genes"
+              from_work_dir="Solo.out/Gene/filtered/features.tsv" />
+        <data format="tsv" name="output_barcodes" label="${tool.name} on ${on_string}: Barcodes"
+              from_work_dir="Solo.out/Gene/filtered/barcodes.tsv" />
+        <data format="mtx" name="output_matrix" label="${tool.name} on ${on_string}: Matrix Gene Counts"
+              from_work_dir="Solo.out/Gene/filtered/matrix.mtx" >
             <filter>solo['soloFeatures'] == "Gene" </filter>
+            <expand macro="dbKeyActions" />
         </data>
-        <data format="mtx" name="output_matrixSJ" label="${tool.name} on ${on_string}: Matrix Splice Junction Counts" from_work_dir="Solo.out/matrixSJ.mtx" >
+        <data format="mtx" name="output_matrixSJ" label="${tool.name} on ${on_string}: Matrix Splice Junction Counts"
+              from_work_dir="Solo.out/Gene/filtered/matrixSJ.mtx" >
             <filter>solo['soloFeatures'] == "SJ" </filter>
+            <expand macro="dbKeyActions" />
         </data>
-        <data format="mtx" name="output_matrixGeneFull" label="${tool.name} on ${on_string}: Matrix Full Gene Counts" from_work_dir="Solo.out/matrixGeneFull.mtx" >
+        <data format="mtx" name="output_matrixGeneFull" label="${tool.name} on ${on_string}: Matrix Full Gene Counts"
+              from_work_dir="Solo.out/Gene/filtered/matrixGeneFull.mtx" >
             <filter>solo['soloFeatures'] == "GeneFull" </filter>
+            <expand macro="dbKeyActions" />
+        </data>
+        <data format="bam" name="output_BAM" label="${tool.name} on ${on_string}: Alignments" >
+            <expand macro="dbKeyActions" />
         </data>
-        <data format="txt" name="output_stats" label="${tool.name} on ${on_string}: Feature Statistic Summaries" from_work_dir="Solo.out/Gene.stats" />
+        <data format="txt" name="output_stats" label="${tool.name} on ${on_string}: Feature Statistic Summaries"
+              from_work_dir="Solo.out/Gene/Features.stats" />
     </outputs>
+    <!-- Generating test data that is big enough for STARsolo to detect and small enough
+         for Galaxy to test requires careful modification of input FASTA and GTF data,
+         where the length of FASTA cannot exceed the largest position in the GTF file,
+         regardless of the FASTA starting sequence position.
+
+         A full writeup of how to subset single cell data for use in STARsolo is given
+         here: https://gist.github.com/mtekman/149a7c52fd73e5d8ebe49f5a27b0743d
+    -->
     <tests>
-        <test expect_num_outputs="5">
+        <test expect_num_outputs="6">
             <conditional name="input_types">
                 <param name="use" value="repeat" />
-                <repeat name="input_repeats" >
-                    <param name="input1" value="41737_R1_sub240k.fastq.gz" ftype="fastqsanger.gz" />
-                    <param name="input2" value="41737_R2_sub240k.fastq.gz" ftype="fastqsanger.gz" />
-                </repeat>
+                <param name="input1" value="pbmc_1k_v2_L001.R1.10k.fastq.gz" ftype="fastqsanger.gz" />
+                <param name="input2" value="pbmc_1k_v2_L001.R2.10k.fastq.gz" ftype="fastqsanger.gz" />
             </conditional>
-            <param name="soloCBwhitelist" value="737K-august-2016.small.txt.gz" />
+            <param name="soloCBwhitelist" value="filtered.barcodes.txt" />
             <conditional name="refGenomeSource">
                 <param name="geneSource" value="history" />
-                <param name="genomeFastaFiles" value="SNORD83B.22.fa" />
+                <param name="genomeFastaFiles" value="filtered3.Homo_sapiens.GRCh38.dna.chromosome.21.fa.gz" />
                 <param name="genomeSAindexNbases" value="4" />
-                <conditional name="GTFconditional">
-                    <param name="GTFselect" value="with-gtf" />
-                    <param name="sjdbOverhang" value="75"/>
-                    <param name="sjdbGTFfile" value="SNORD83B.22.gtf" ftype="gtf"/>
-                </conditional>
+                <param name="sjdbOverhang" value="100" />
+                <param name="sjdbGTFfile" value="filtered3.Homo_sapiens.GRCh38.100.chr21.gtf" ftype="gtf"/>
             </conditional>
             <section name="solo" >
                 <conditional name="params">
-                    <param name="chemistry" value="CR2" />
+                    <param name="chemistry" value="CR3" />
                 </conditional>
                 <param name="soloStrand" value="Forward" />
                 <param name="soloFeatures" value="Gene" />
                 <param name="soloUMIdedup" value="1MM_All" />
             </section>
+            <output name="output_barcodes" >
+                <assert_contents>
+                    <!-- first and last line -->
+                    <has_line line="ACACCGGTCTAACGGT" />
+                    <has_line line="TTCTCAATCCACGTTC" />
+                </assert_contents>
+            </output>
             <output name="output_genes">
                 <assert_contents>
-                    <has_line_matching expression="ENSG00000209480\sSNORD83B" />
+                    <has_line_matching expression="ENSG00000279493\s+FP565260\.4\s+Gene\s+Expression" />
+                    <has_line_matching expression="ENSG00000279064\s+FP236315\.1\s+Gene\s+Expression" />
                 </assert_contents>
             </output>
             <output name="output_matrix" >
                 <assert_contents>
-                    <has_line_matching expression="1\s137281\s0" />
+                    <has_line_matching expression="14\s+7\s+7" />
+                    <has_line_matching expression="4\s+7\s+1" />
                 </assert_contents>
             </output>
             <output name="output_stats" >
                 <assert_contents>
-                    <has_line_matching expression="\s+nNoFeature\s+3253" />
-                    <has_line_matching expression="\s+nUMIs\s+0" />
+                    <has_line_matching expression="\s+nUnmapped\s+5823" />
+                    <has_line_matching expression="\s+nUMIs\s+8" />
                 </assert_contents>
             </output>
+            <output name="output_BAM" value="filtered3.bam" compare="sim_size" delta="600" />
         </test>
-        <test expect_num_outputs="5">
+        <test expect_num_outputs="6"><!-- same as above, but using custom -->
             <conditional name="input_types">
                 <param name="use" value="repeat" />
-                <repeat name="input_repeats" >
-                    <param name="input1" value="41737_R1_sub240k.fastq.gz" ftype="fastqsanger.gz" />
-                    <param name="input2" value="41737_R2_sub240k.fastq.gz" ftype="fastqsanger.gz" />
-                </repeat>
+                <param name="input1" value="pbmc_1k_v2_L001.R1.10k.fastq.gz" ftype="fastqsanger.gz" />
+                <param name="input2" value="pbmc_1k_v2_L001.R2.10k.fastq.gz" ftype="fastqsanger.gz" />
             </conditional>
-            <param name="soloCBwhitelist" value="737K-august-2016.small.txt.gz" />
+            <param name="soloCBwhitelist" value="filtered.barcodes.txt" />
             <conditional name="refGenomeSource">
                 <param name="geneSource" value="history" />
-                <param name="genomeFastaFiles" value="SNORD83B.22.fa" />
+                <param name="genomeFastaFiles" value="filtered3.Homo_sapiens.GRCh38.dna.chromosome.21.fa.gz" />
                 <param name="genomeSAindexNbases" value="4" />
-                <conditional name="GTFconditional">
-                    <param name="GTFselect" value="with-gtf" />
-                    <param name="sjdbOverhang" value="75" />
-                    <param name="sjdbGTFfile" value="SNORD83B.22.gtf" ftype="gtf"/>
-                </conditional>
+                <param name="sjdbOverhang" value="100" />
+                <param name="sjdbGTFfile" value="filtered3.Homo_sapiens.GRCh38.100.chr21.gtf" ftype="gtf"/>
             </conditional>
             <section name="solo" >
                 <conditional name="params">
@@ -231,127 +278,108 @@
                     <param name="soloCBstart" value="1" />
                     <param name="soloCBlen" value="16" />
                     <param name="soloUMIstart" value="17" />
-                    <param name="soloUMIlen" value="10" />
+                    <param name="soloUMIlen" value="12" />
                 </conditional>
                 <param name="soloStrand" value="Forward" />
-                <param name="soloFeatures" value="GeneFull" />
-                <param name="soloUMIdedup" value="1MM_Directional" />
-            </section>
-            <output name="output_barcodes" >
-                <assert_contents>
-                    <has_line line="TTTGTCATCTTAGAGC" />
-                    <has_line line="TTTGTCATCTTTCCTC" />
-                </assert_contents>
-            </output>
-        </test>
-        <test expect_num_outputs="5">
-            <!-- Multiple repeats test -->
-            <conditional name="input_types">
-                <param name="use" value="repeat" />
-                <repeat name="input_repeats" >
-                    <param name="input1" value="41737_R1_sub240k.fastq.gz" ftype="fastqsanger.gz" />
-                    <param name="input2" value="41737_R2_sub240k.fastq.gz" ftype="fastqsanger.gz" />
-                </repeat>
-                <repeat name="input_repeats" >
-                    <param name="input1" value="41737_R1_sub240k.fastq.gz" ftype="fastqsanger.gz" />
-                    <param name="input2" value="41737_R2_sub240k.fastq.gz" ftype="fastqsanger.gz" />
-                </repeat>
-                <repeat name="input_repeats" >
-                    <param name="input1" value="41737_R1_sub240k.fastq.gz" ftype="fastqsanger.gz" />
-                    <param name="input2" value="41737_R2_sub240k.fastq.gz" ftype="fastqsanger.gz" />
-                </repeat>
-            </conditional>
-            <param name="soloCBwhitelist" value="737K-august-2016.small.txt.gz" />
-            <conditional name="refGenomeSource">
-                <param name="geneSource" value="history" />
-                <param name="genomeFastaFiles" value="SNORD83B.22.fa" />
-                <param name="genomeSAindexNbases" value="4" />
-                <conditional name="GTFconditional">
-                    <param name="GTFselect" value="with-gtf" />
-                    <param name="sjdbOverhang" value="75" />
-                    <param name="sjdbGTFfile" value="SNORD83B.22.gtf" ftype="gtf"/>
-                </conditional>
-            </conditional>
-            <section name="solo" >
-                <conditional name="params">
-                    <param name="chemistry" value="custom" />
-                    <param name="soloCBstart" value="1" />
-                    <param name="soloCBlen" value="16" />
-                    <param name="soloUMIstart" value="17" />
-                    <param name="soloUMIlen" value="10" />
-                </conditional>
-                <param name="soloStrand" value="Forward" />
-                <param name="soloFeatures" value="GeneFull" />
-                <param name="soloUMIdedup" value="1MM_Directional" />
+                <param name="soloFeatures" value="Gene" />
+                <param name="soloUMIdedup" value="1MM_All" />
             </section>
             <output name="output_barcodes" >
                 <assert_contents>
-                    <has_line line="TTTGTCATCTTAGAGC" />
-                    <has_line line="TTTGTCATCTTTCCTC" />
+                    <has_line line="ACACCGGTCTAACGGT" />
+                    <has_line line="TTCTCAATCCACGTTC" />
+                </assert_contents>
+            </output>
+            <output name="output_genes">
+                <assert_contents>
+                    <has_line_matching expression="ENSG00000279493\s+FP565260\.4\s+Gene\s+Expression" />
+                    <has_line_matching expression="ENSG00000279064\s+FP236315\.1\s+Gene\s+Expression" />
+                </assert_contents>
+            </output>
+            <output name="output_matrix" >
+                <assert_contents>
+                    <has_line_matching expression="14\s+7\s+7" />
+                    <has_line_matching expression="4\s+7\s+1" />
+                </assert_contents>
+            </output>
+            <output name="output_stats" >
+                <assert_contents>
+                    <has_line_matching expression="\s+nUnmapped\s+5823" />
+                    <has_line_matching expression="\s+nUMIs\s+8" />
                 </assert_contents>
             </output>
+            <output name="output_BAM" value="filtered3.bam" compare="sim_size" delta="600" />
         </test>
-        <test expect_num_outputs="5">
-            <!-- Same as the test before but with a collection of pairs -->
+        <test expect_num_outputs="6"><!-- Multiple repeats test -->
+            <conditional name="input_types">
+                <param name="use" value="repeat" />
+                <param name="input1" value="pbmc_1k_v2_L001.R1.10k.fastq.gz,pbmc_1k_v2_L001.R1.10k.fastq.gz,pbmc_1k_v2_L001.R1.10k.fastq.gz" ftype="fastqsanger.gz" />
+                <param name="input2" value="pbmc_1k_v2_L001.R2.10k.fastq.gz,pbmc_1k_v2_L001.R2.10k.fastq.gz,pbmc_1k_v2_L001.R2.10k.fastq.gz" ftype="fastqsanger.gz" />
+            </conditional>
+            <param name="soloCBwhitelist" value="filtered.barcodes.txt" />
+            <conditional name="refGenomeSource">
+                <param name="geneSource" value="history" />
+                <param name="genomeFastaFiles" value="filtered3.Homo_sapiens.GRCh38.dna.chromosome.21.fa.gz" />
+                <param name="genomeSAindexNbases" value="4" />
+                <param name="sjdbOverhang" value="100" />
+                <param name="sjdbGTFfile" value="filtered3.Homo_sapiens.GRCh38.100.chr21.gtf" ftype="gtf"/>
+            </conditional>
+            <section name="solo" >
+                <conditional name="params">
+                    <param name="chemistry" value="CR3" />
+                </conditional>
+                <param name="soloStrand" value="Forward" />
+                <param name="soloFeatures" value="Gene" />
+                <param name="soloUMIdedup" value="1MM_All" />
+            </section>
+            <output name="output_barcodes" >
+                <assert_contents>
+                    <has_line line="ACACCGGTCTAACGGT" />
+                    <has_line line="TTCTCAATCCACGTTC" />
+                </assert_contents>
+            </output>
+            <!-- BAM output is huge, we don't need to test here -->
+        </test>
+        <test expect_num_outputs="6">
+            <!-- Test with paired collection -->
             <conditional name="input_types">
                 <param name="use" value="list_paired" />
-                <param name="input_repeats" >
-                    <collection type="list:paired">
-                        <element name="Pair1">
-                            <collection type="paired">
-                                <element name="forward" value="41737_R1_sub240k.fastq.gz" ftype="fastqsanger.gz" />
-                                <element name="reverse" value="41737_R2_sub240k.fastq.gz" ftype="fastqsanger.gz" />
-                            </collection>
-                        </element>
-                        <element name="Pair2">
-                            <collection type="paired">
-                                <element name="forward" value="41737_R1_sub240k.fastq.gz" ftype="fastqsanger.gz" />
-                                <element name="reverse" value="41737_R2_sub240k.fastq.gz" ftype="fastqsanger.gz" />
-                            </collection>
-                        </element>
-                        <!-- Planemo does not support more than 2 elements in a list of pairs -->
-                        <!-- <element name="Pair3"> -->
-                        <!--     <element name="forward" value="41737_R1_sub240k.fastq.gz" ftype="fastqsanger.gz" /> -->
-                        <!--     <element name="reverse" value="41737_R2_sub240k.fastq.gz" ftype="fastqsanger.gz" /> -->
-                        <!-- </element> -->
+                <param name="input_collection" >
+                    <collection type="paired">
+                        <element name="forward" value="pbmc_1k_v2_L001.R1.10k.fastq.gz" ftype="fastqsanger.gz" />
+                        <element name="reverse" value="pbmc_1k_v2_L001.R2.10k.fastq.gz" ftype="fastqsanger.gz" />
                     </collection>
                 </param>
             </conditional>
-            <param name="soloCBwhitelist" value="737K-august-2016.small.txt.gz" />
+            <param name="soloCBwhitelist" value="filtered.barcodes.txt" />
             <conditional name="refGenomeSource">
                 <param name="geneSource" value="history" />
-                <param name="genomeFastaFiles" value="SNORD83B.22.fa" />
+                <param name="genomeFastaFiles" value="filtered3.Homo_sapiens.GRCh38.dna.chromosome.21.fa.gz" />
                 <param name="genomeSAindexNbases" value="4" />
-                <conditional name="GTFconditional">
-                    <param name="GTFselect" value="with-gtf" />
-                    <param name="sjdbOverhang" value="75" />
-                    <param name="sjdbGTFfile" value="SNORD83B.22.gtf" ftype="gtf"/>
-                </conditional>
+                <param name="sjdbOverhang" value="100" />
+                <param name="sjdbGTFfile" value="filtered3.Homo_sapiens.GRCh38.100.chr21.gtf" ftype="gtf"/>
             </conditional>
             <section name="solo" >
                 <conditional name="params">
-                    <param name="chemistry" value="custom" />
-                    <param name="soloCBstart" value="1" />
-                    <param name="soloCBlen" value="16" />
-                    <param name="soloUMIstart" value="17" />
-                    <param name="soloUMIlen" value="10" />
+                    <param name="chemistry" value="CR3" />
                 </conditional>
                 <param name="soloStrand" value="Forward" />
-                <param name="soloFeatures" value="GeneFull" />
-                <param name="soloUMIdedup" value="1MM_Directional" />
+                <param name="soloFeatures" value="Gene" />
+                <param name="soloUMIdedup" value="1MM_All" />
             </section>
             <output name="output_barcodes" >
                 <assert_contents>
-                    <has_line line="TTTGTCATCTTAGAGC" />
-                    <has_line line="TTTGTCATCTTTCCTC" />
+                    <has_line line="ACACCGGTCTAACGGT" />
+                    <has_line line="TTCTCAATCCACGTTC" />
                 </assert_contents>
             </output>
+            <output name="output_BAM" value="filtered3.bam" compare="sim_size" delta="600" />
         </test>
     </tests>
     <help><![CDATA[
 **What it does**
 
-**STARSolo** is a turnkey solution for analyzing droplet single cell RNA sequencing data (e.g. 10X Genomics Chromium System) built directly into STAR code. STARsolo inputs the raw FASTQ reads files, and performs the following operations:
+**STARSolo** is a turnkey solution for analyzing droplet single cell RNA sequencing data (e.g. 10X Genomics Chromium System) built directly into STAR_ code. STARsolo takes raw FASTQ reads files as input, and performs the following operations:
 
  * Error correction and demultiplexing of cell barcodes using user-input whitelist
  * Mapping the reads to the reference genome using the standard STAR spliced read alignment algorithm
@@ -360,6 +388,7 @@
 
 STARsolo output is designed to be a drop-in replacement for 10X CellRanger gene quantification output. It follows CellRanger logic for cell barcode whitelisting and UMI deduplication, and produces nearly identical gene counts in the same format. At the same time STARsolo is 10 times faster than CellRanger.
 
+.. _STAR: https://github.com/alexdobin/STAR
 ]]></help>
     <expand macro="citations"/>
 </tool>
diff -r 178bdbdb6d24 -r e403d27e8f24 test-data/41737_R1_sub240k.fastq.gz
Binary file test-data/41737_R1_sub240k.fastq.gz has changed
diff -r 178bdbdb6d24 -r e403d27e8f24 test-data/41737_R2_sub240k.fastq.gz
Binary file test-data/41737_R2_sub240k.fastq.gz has changed
diff -r 178bdbdb6d24 -r e403d27e8f24 test-data/737K-august-2016.small.txt.gz
Binary file test-data/737K-august-2016.small.txt.gz has changed
diff -r 178bdbdb6d24 -r e403d27e8f24 test-data/SNORD83B.22.fa
--- a/test-data/SNORD83B.22.fa	Thu Nov 28 15:55:47 2019 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,17 +0,0 @@
->22 dna:chromosome chromosome:GRCh38:22:39313740:50818468:1 REF
-CACACTCAAAGCAGCAAACAGCCCAGCAAGGCCAGACTGGGAATTTCCTCATCTCAGGAC
-TTCAAAGCCAGTGTGAAAGGACTGCCAACACCCTCTCCTTCCTTTCCTCTCCCACCACAG
-GGCCACCAGCGTCTGTGGCCTTGGATCCTCCCTCTACAAGAGCCCCCCCATGACAAGTCA
-GGACCTGCCTCACCTTGCGGAGGGTGAGCACCCGCTTCTTGGTTCCCACCACACAGCCTT
-TCAGCATGACAAAGTCATTGGTCACTTCACCATAGTGGACAAAGCCACCCTGGAAAACGA
-GCATCGGATCAGCACAGGCCCAGGAGGGGATTGTCGTGCAGATGACCCCTCCAGGTTCAG
-GCCCTCCCTGACCACAGGGCTGTTCTCAGAAGGAAGGCAACAAGGAACGGTTCCGCAGTC
-TGTCTCGGGCGCTGTGCCCAGCGCACATTCCAGGCCTCATCACTGAACAGCTGAGCCTGA
-GACCCCACTTCTCACCAGCCAACCCCGACGAGTGGACTCAGATGACAACATGCCACTTAC
-AAGGGACACAGCTAGGTGTTGTGTTGGCTTCAGTTAACGATCCTGCTAGCAGCCCCTAGG
-AAGCAGCCTATCCCCAAAAGCACGAGGCCTGGGATGGCCTCACAGAGCAGAACACCCATT
-ACTTACCAGAGGGTTGATGCTCTTGTCAGATAGGTCATAGTCAGTGGAGGCATTGTTCTT
-GATCAGCTTGCCGTCCTTGATAAGGTAGCCCTGGCCAATCTTATAAATCTGAATGAACAA
-GAAGGGTGTAAGGCTGGGGCATTAGGGACAAATAACCCAGACATGCCAGTGTGCTGACCT
-GCAAAGCACGCTAGAAGGCAGCTGAGGCCTCAGTCCCAGTCACAGCGTATCCCAAGGTCA
-GAGCAAAAAGCTGGCTGGCCCTCCAGGTTCCTTTCTGTAAGGCGGCTGGGCTAAAACTAA
\ No newline at end of file
diff -r 178bdbdb6d24 -r e403d27e8f24 test-data/SNORD83B.22.gtf
--- a/test-data/SNORD83B.22.gtf	Thu Nov 28 15:55:47 2019 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,8 +0,0 @@
-#!genome-build GRCh38.p12
-#!genome-version GRCh38
-#!genome-date 2013-12
-#!genome-build-accession NCBI:GCA_000001405.27
-#!genebuild-last-updated 2018-11
-22	ensembl	gene	39313819	39313911	.	-	.	gene_id "ENSG00000209480"; gene_version "1"; gene_name "SNORD83B"; gene_source "ensembl"; gene_biotype "snoRNA";
-22	ensembl	transcript	39313819	39313911	.	-	.	gene_id "ENSG00000209480"; gene_version "1"; transcript_id "ENST00000386745"; transcript_version "1"; gene_name "SNORD83B"; gene_source "ensembl"; gene_biotype "snoRNA"; transcript_name "SNORD83B-201"; transcript_source "ensembl"; transcript_biotype "snoRNA"; tag "basic"; transcript_support_level "NA";
-22	ensembl	exon	39313819	39313911	.	-	.	gene_id "ENSG00000209480"; gene_version "1"; transcript_id "ENST00000386745"; transcript_version "1"; exon_number "1"; gene_name "SNORD83B"; gene_source "ensembl"; gene_biotype "snoRNA"; transcript_name "SNORD83B-201"; transcript_source "ensembl"; transcript_biotype "snoRNA"; exon_id "ENSE00001501751"; exon_version "1"; tag "basic"; transcript_support_level "NA";
diff -r 178bdbdb6d24 -r e403d27e8f24 test-data/filtered.barcodes.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/filtered.barcodes.txt	Wed Aug 05 09:41:22 2020 -0400
@@ -0,0 +1,394 @@
+AAACCTGAGCGCTCCA
+AAACGGGGTTTGTGTG
+AAAGATGAGTACTTGC
+AAAGCAATCCACGAAT
+AAAGTAGGTAGCAAAT
+AACCATGGTAGTACCT
+AACCGCGCACATCTTT
+AACCGCGCATGCCTAA
+AACGTTGTCACAGTAC
+AACTTTCTCTGTTTGT
+AAGACCTTCAAACGGG
+AAGGAGCAGTATCGAA
+AAGGAGCAGTGGTAGC
+AAGGAGCCAGCTTAAC
+AAGGAGCTCTAAGCCA
+ACACCAACAGCTGTAT
+ACACCGGTCTAACGGT
+ACATACGCACACCGCA
+ACATACGTCTGCCCTA
+ACATACGTCTGGCGAC
+ACATCAGCAAACGCGA
+ACATGGTCAGACTCGC
+ACCAGTAAGCCTCGTG
+ACCGTAACACAACGCC
+ACCGTAAGTTCAGTAC
+ACCGTAATCTTGGGTA
+ACGAGCCCAAGAGTCG
+ACGAGCCGTGCTGTAT
+ACGAGGATCCTATGTT
+ACGAGGATCTTTAGTC
+ACGATACCAAAGTCAA
+ACGCAGCTCACCGTAA
+ACGCCGAAGCGCTTAT
+ACGGAGACATCTATGG
+ACGGCCACACCGAAAG
+ACGGGCTGTCGGCACT
+ACGGGTCCACACCGCA
+ACTGAGTAGACGACGT
+ACTGAGTTCGGAGCAA
+ACTGAGTTCGTCTGAA
+ACTGATGCAAGTTCTG
+ACTGCTCGTGCAGGTA
+ACTGTCCAGAGCTGCA
+ACTGTCCTCCCACTTG
+ACTTACTAGTTAGCGG
+ACTTACTGTCCCTTGT
+ACTTACTGTTACCAGT
+ACTTTCAGTCTCCACT
+ACTTTCAGTTAAAGTG
+AGAATAGCAGCTGTAT
+AGACGTTCAAGGCTCC
+AGACGTTCAGACTCGC
+AGACGTTGTCAAAGCG
+AGACGTTTCAGTTTGG
+AGAGCTTGTGACGCCT
+AGAGTGGCAGATGAGC
+AGAGTGGTCTTTAGGG
+AGCATACCAGGGTATG
+AGCCTAAGTTTAGGAA
+AGCCTAATCCCGACTT
+AGCGGTCAGTACATGA
+AGCGGTCGTTCCACGG
+AGCTCCTGTGTTTGGT
+AGCTCTCAGCAGCCTC
+AGCTCTCAGTGTTAGA
+AGGCCACGTCAGCTAT
+AGGCCACGTGCAGGTA
+AGGCCACTCGTGGTCG
+AGGGAGTAGGGTCTCC
+AGGGAGTTCGATGAGG
+AGGGATGGTTCAGGCC
+AGGTCATAGCTCCTCT
+AGGTCATCATCCGTGG
+AGTAGTCAGGATGTAT
+AGTAGTCCAATGGATA
+AGTCTTTAGCAGGCTA
+AGTGAGGCAATCGGTT
+AGTGAGGTCGAACGGA
+AGTGTCAAGGCGATAC
+AGTGTCAGTTCCATGA
+ATAACGCGTCGGCACT
+ATAAGAGCACCAGGTC
+ATAAGAGCACTTCTGC
+ATAAGAGTCGGGAGTA
+ATAGACCGTCCTAGCG
+ATCACGACATATGCTG
+ATCACGAGTCGACTGC
+ATCATGGTCCGTACAA
+ATCCACCCATTACGAC
+ATCGAGTCAGGTCTCG
+ATCGAGTGTTCCGTCT
+ATCTGCCCACCAGGCT
+ATCTGCCTCGCCATAA
+ATGAGGGGTCTTCAAG
+ATGTGTGAGGCTCAGA
+ATTACTCAGACCCACC
+ATTCTACAGTTTCCTT
+ATTCTACTCATTGCGA
+ATTTCTGTCTAACTCT
+CAACCAAGTCCGTCAG
+CAACTAGTCATGGTCA
+CAAGAAAGTTCCGTCT
+CAAGATCTCGTAGGTT
+CAAGGCCCAATCTACG
+CAAGGCCGTTATTCTC
+CAAGTTGTCGTACGGC
+CACAAACAGCCCAATT
+CACACCTTCCCAACGG
+CACACTCCATATGAGA
+CACAGGCCAGTCCTTC
+CACAGGCGTCATGCCG
+CACAGTAAGCTGTCTA
+CACAGTACAGTCGTGC
+CACATAGTCGTACCGG
+CACCACTAGTGTACCT
+CACCACTCATACGCCG
+CACCTTGAGTGTACGG
+CAGAATCGTGAAGGCT
+CAGAATCGTTACGACT
+CAGAGAGTCTTGTACT
+CAGCAGCGTGCAACGA
+CAGCATAAGTGGCACA
+CAGCCGAGTTCTGAAC
+CAGCTAACACCTCGTT
+CAGCTAAGTCAGTGGA
+CATATTCCACCTCGTT
+CATCAAGAGACAGAGA
+CATCCACAGGCGACAT
+CATCCACTCTGCCAGG
+CATGCCTGTTCTCATT
+CCAATCCAGACCTAGG
+CCACCTACAGAAGCAC
+CCACCTACAGCCTGTG
+CCCAATCTCCTAAGTG
+CCCAGTTAGTCCAGGA
+CCCAGTTCAAGGTTCT
+CCCATACAGCACCGCT
+CCCATACGTACCGCTG
+CCCATACGTGTTTGTG
+CCCTCCTGTGTGCCTG
+CCCTCCTTCGGTCCGA
+CCGGTAGGTGCAGTAG
+CCGGTAGTCTTCCTTC
+CCGTACTCATGGTCTA
+CCGTACTTCACTTCAT
+CCTAAAGGTGAGGGAG
+CCTACCAAGTGGGATC
+CCTACCAGTAAGTGGC
+CCTAGCTAGTCAAGCG
+CCTAGCTGTTTGCATG
+CGACCTTAGCCGTCGT
+CGACCTTAGCGATCCC
+CGACCTTTCTGTCAAG
+CGACTTCGTTCGAATC
+CGACTTCGTTGTGGCC
+CGACTTCTCATATCGG
+CGAGAAGTCTTGCATT
+CGAGCACAGAAGGTTT
+CGAGCACCAACGATGG
+CGAGCACTCAGAAATG
+CGAGCCACACCAGCAC
+CGATCGGCATAACCTG
+CGATGGCGTGCACGAA
+CGATGGCGTGGTTTCA
+CGCGGTACAGTATGCT
+CGCGGTACATGGATGG
+CGCTATCTCATCTGTT
+CGCTGGAAGGAGCGTT
+CGCTTCAAGTACGCGA
+CGCTTCAAGTTCGCGC
+CGCTTCACAATCAGAA
+CGGACACTCTATCCCG
+CGGACGTTCAGATAAG
+CGGACGTTCTCATTCA
+CGGACTGTCTAACTCT
+CGGAGCTCACGAAGCA
+CGGAGTCTCAACACCA
+CGGGTCAGTCGACTAT
+CGGGTCATCATCGCTC
+CGGTTAAGTTCAGTAC
+CGGTTAAGTTGTGGCC
+CGTCACTTCGAATGGG
+CGTGTCTAGACTGTAA
+CGTGTCTAGATAGCAT
+CGTTAGACAAGGGTCA
+CGTTCTGGTACATGTC
+CTAACTTGTATGCTTG
+CTAACTTTCTAACCGA
+CTAAGACGTTTGTGTG
+CTACATTAGAAACGCC
+CTACATTAGGTGACCA
+CTACATTTCTCGAGTA
+CTAGAGTAGACACGAC
+CTAGAGTGTCGCGAAA
+CTCACACCATTAACCG
+CTCACACGTGCTTCTC
+CTCAGAATCGGATGGA
+CTCATTATCTAGAGTC
+CTCCTAGTCACGCATA
+CTCGGAGAGCTGAAAT
+CTCGGAGTCTTAGAGC
+CTCGGGACACACGCTG
+CTCGGGATCGTAGGAG
+CTCGTACAGGTAAACT
+CTCTAATGTCCAGTTA
+CTCTGGTAGAGTGACC
+CTGAAGTCAATTGCTG
+CTGAAGTGTATAATGG
+CTGAAGTGTGTCGCTG
+CTGATCCAGTAGCGGT
+CTGATCCTCGTCACGG
+CTGCCTAGTTCGTGAT
+CTGCGGAAGACTAGAT
+CTGCTGTCAAGGTTCT
+CTGCTGTCATTATCTC
+CTGCTGTTCAACTCTT
+CTGGTCTTCATAAAGG
+CTGTGCTAGCAGGTCA
+CTGTGCTCATATACGC
+CTGTTTAAGGGATGGG
+CTTACCGGTGGACGAT
+CTTAGGACAAACCTAC
+CTTCTCTAGATGGCGT
+CTTGGCTAGTCAAGGC
+CTTTGCGAGATCCTGT
+CTTTGCGGTTTAAGCC
+CTTTGCGGTTTGACAC
+GAAATGATCTCCTATA
+GAATAAGGTCAAAGAT
+GAATGAATCATCACCC
+GACCAATCAGCTGGCT
+GACCAATGTCATGCAT
+GACGCGTTCCGATATG
+GACGGCTCATGATCCA
+GACGTGCCATACGCTA
+GACTGCGCAATGGACG
+GACTGCGCATCTACGA
+GACTGCGGTCGGCACT
+GATCGCGTCGTAGGTT
+GATCTAGGTCTAGCGC
+GATGAAATCACAACGT
+GATGCTAGTATATGGA
+GATTCAGCATGCGCAC
+GCAAACTAGAGGGCTT
+GCAAACTGTGTCAATC
+GCAAACTTCTGCGTAA
+GCACTCTAGCACAGGT
+GCAGCCACAGGACCCT
+GCAGCCATCCTCAATT
+GCATGATGTCAACATC
+GCATGTACACAGCGTC
+GCATGTAGTTCAACCA
+GCATGTAGTTGCCTCT
+GCGACCACAGACAAAT
+GCGAGAACAGATGGGT
+GCGCAACCACCTGGTG
+GCGCAACTCGTCACGG
+GCGCAGTAGGAGTACC
+GCGCAGTGTTCGCTAA
+GCGCGATAGGATGGAA
+GCGCGATGTAGCTTGT
+GCGGGTTCATCCGTGG
+GCGGGTTTCGTTTATC
+GCTCTGTGTGCCTGGT
+GCTGCAGTCTGAGTGT
+GCTTCCAAGCAGGCTA
+GCTTCCAGTGCAGTAG
+GCTTGAAAGAAGGACA
+GGAATAACACCAGGTC
+GGACAAGAGTACGCCC
+GGACATTCACTGCCAG
+GGACATTTCACAGTAC
+GGACGTCAGTGGGATC
+GGATGTTTCCACTGGG
+GGCAATTCACCATCCT
+GGCGACTTCAACACCA
+GGCTGGTTCTCGTTTA
+GGGAATGAGGGTTTCT
+GGGACCTCAGTCGATT
+GGGACCTTCGGAGGTA
+GGGATGAGTGCAGACA
+GGTGCGTTCAGCTCGG
+GGTGCGTTCGCTAGCG
+GTACGTAGTATCAGTC
+GTACTCCCACAGACAG
+GTAGGCCCACTGCCAG
+GTATCTTAGACGCTTT
+GTATCTTTCCTCAACC
+GTATTCTAGGTTCCTA
+GTCACAATCTCAACTT
+GTCACGGAGCACACAG
+GTCATTTGTGCTTCTC
+GTGCAGCTCTTCATGT
+GTGCATAAGGAGCGTT
+GTGCGGTAGCTACCGC
+GTGCGGTAGGCCGAAT
+GTGCGGTCATGCCACG
+GTGCTTCAGATGAGAG
+GTGGGTCCATCGGGTC
+GTGGGTCGTTCGAATC
+GTTAAGCAGCCACCTG
+GTTAAGCAGTACATGA
+GTTAAGCCAATTGCTG
+GTTACAGGTCAGGACA
+GTTACAGTCCAGTAGT
+GTTCTCGTCTAACTGG
+TAAACCGCAAGGACAC
+TAAACCGCATACGCCG
+TAAACCGCATGGTAGG
+TAAGCGTAGCTCCTCT
+TACACGATCGTGGGAA
+TACAGTGAGTGTCCCG
+TACAGTGCAGCTCGCA
+TACGGATCAGCTATTG
+TACGGGCCACAACGTT
+TACGGTAAGGATGCGT
+TACTTACAGGCTATCT
+TACTTGTAGACTTTCG
+TACTTGTCACATAACC
+TAGCCGGCAGGGTTAG
+TATGCCCCAATGTAAG
+TATGCCCGTACTTAGC
+TCAACGAAGCTAGTGG
+TCAATCTAGGATGCGT
+TCACAAGCATCCTTGC
+TCACGAATCACTCCTG
+TCAGATGTCGTTGCCT
+TCAGCAATCAGCACAT
+TCAGGATGTATAGGGC
+TCGCGAGGTTCCAACA
+TCGCGAGGTTGTCTTT
+TCGTACCAGGCTCAGA
+TCGTAGAGTCTTGTCC
+TCTATTGCATGCCTAA
+TCTCTAACAGATCCAT
+TCTTTCCTCCACTCCA
+TGACAACGTTGTGGCC
+TGACTAGGTTCGGGCT
+TGACTAGTCACATACG
+TGACTTTCATTGGCGC
+TGAGAGGCATGTCGAT
+TGAGCCGAGCGAAGGG
+TGAGCCGCAGTCACTA
+TGAGGGAAGAGACTTA
+TGAGGGACATCCAACA
+TGCACCTCATGCAATC
+TGCCAAACAAACCTAC
+TGCCAAATCGAATCCA
+TGCCCTAAGTGTACTC
+TGCGCAGAGGAGTTTA
+TGCGCAGGTGGGTATG
+TGCGTGGGTCTCCACT
+TGCTACCCATGACGGA
+TGCTACCTCGGCTACG
+TGCTGCTGTTATTCTC
+TGCTGCTGTTCGGCAC
+TGCTGCTTCAAAGTAG
+TGGACGCAGACCACGA
+TGGACGCCAGAGTGTG
+TGGCGCACAGATGGGT
+TGGCTGGCACCCATTC
+TGGGAAGCATCCCATC
+TGGTTAGTCAACACAC
+TGGTTAGTCACAATGC
+TGGTTCCAGTATTGGA
+TGGTTCCCAAGCCGCT
+TGGTTCCCATCGTCGG
+TGTATTCGTAGCGTGA
+TGTCCCATCAACACTG
+TGTGGTAAGGGCATGT
+TTAACTCCAACACCTA
+TTAGGACCAGCCTTTC
+TTAGGACGTCTTTCAT
+TTAGTTCCAAGTAGTA
+TTATGCTCACCAACCG
+TTATGCTTCCACGTTC
+TTATGCTTCCCTTGTG
+TTCCCAGTCTTGCATT
+TTCGGTCAGCTAAACA
+TTCTCAAAGCTACCTA
+TTCTCAATCCACGTTC
+TTCTCAATCGCCTGAG
+TTCTCCTTCGCCAAAT
+TTCTTAGTCAGCTCGG
+TTGAACGAGCTTCGCG
+TTGAACGCACGAAAGC
+TTGCGTCGTTATTCTC
+TTGTAGGTCGGATGTT
+TTTACTGAGGCTAGGT
+TTTACTGCAGTGGAGT
+TTTCCTCCACTTGGAT
+TTTCCTCCATCTCGCT
+TTTGGTTAGCACCGTC
+TTTGGTTAGTGGGCTA
diff -r 178bdbdb6d24 -r e403d27e8f24 test-data/filtered3.Homo_sapiens.GRCh38.100.chr21.gtf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/filtered3.Homo_sapiens.GRCh38.100.chr21.gtf	Wed Aug 05 09:41:22 2020 -0400
@@ -0,0 +1,461 @@
+#!genome-build GRCh38.p13
+#!genome-version GRCh38
+#!genome-date 2013-12
+#!genome-build-accession NCBI:GCA_000001405.28
+#!genebuild-last-updated 2019-06
+21	havana	gene	1000	6346	.	+	.	gene_id "ENSG00000279493"; gene_version "1"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding";
+21	havana	transcript	1000	6346	.	+	.	gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5";
+21	havana	exon	1000	1075	.	+	.	gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "1"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760288"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5";
+21	havana	CDS	1000	1075	.	+	0	gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "1"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485664"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5";
+21	havana	exon	1749	1888	.	+	.	gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "2"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003758404"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5";
+21	havana	CDS	1749	1888	.	+	2	gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "2"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485664"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5";
+21	havana	exon	3587	3672	.	+	.	gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "3"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003755466"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5";
+21	havana	CDS	3587	3672	.	+	0	gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "3"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485664"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5";
+21	havana	exon	6136	6346	.	+	.	gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "4"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003755385"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5";
+21	havana	CDS	6136	6298	.	+	1	gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "4"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485664"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5";
+21	havana	stop_codon	6299	6301	.	+	0	gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "4"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5";
+21	havana	three_prime_utr	6302	6346	.	+	.	gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5";
+21	ensembl_havana	gene	11694	29867	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding";
+21	ensembl_havana	transcript	11694	29862	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	exon	11694	11894	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003716400"; exon_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	CDS	11881	11894	.	+	0	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000483732"; protein_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	start_codon	11881	11883	.	+	0	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	exon	14210	14250	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003742034"; exon_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	CDS	14210	14250	.	+	1	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000483732"; protein_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	exon	15481	15831	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003714757"; exon_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	CDS	15481	15831	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000483732"; protein_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	exon	17136	17426	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003728725"; exon_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	CDS	17136	17426	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000483732"; protein_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	exon	21254	21418	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003746700"; exon_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	CDS	21254	21418	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000483732"; protein_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	exon	22609	22644	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003753253"; exon_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	CDS	22609	22644	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000483732"; protein_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	exon	29786	29862	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "7"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003756380"; exon_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	CDS	29786	29814	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "7"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000483732"; protein_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	stop_codon	29815	29817	.	+	0	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "7"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	five_prime_utr	11694	11880	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	three_prime_utr	29818	29862	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "1";
+21	ensembl	transcript	11694	29867	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "5";
+21	ensembl	exon	11694	11894	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; exon_id "ENSE00003716400"; exon_version "1"; tag "basic"; transcript_support_level "5";
+21	ensembl	CDS	11881	11894	.	+	0	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; protein_id "ENSP00000484302"; protein_version "1"; tag "basic"; transcript_support_level "5";
+21	ensembl	start_codon	11881	11883	.	+	0	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "5";
+21	ensembl	exon	14210	14250	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; exon_id "ENSE00003742034"; exon_version "1"; tag "basic"; transcript_support_level "5";
+21	ensembl	CDS	14210	14250	.	+	1	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; protein_id "ENSP00000484302"; protein_version "1"; tag "basic"; transcript_support_level "5";
+21	ensembl	exon	17136	17426	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; exon_id "ENSE00003728725"; exon_version "1"; tag "basic"; transcript_support_level "5";
+21	ensembl	CDS	17136	17426	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; protein_id "ENSP00000484302"; protein_version "1"; tag "basic"; transcript_support_level "5";
+21	ensembl	exon	21254	21418	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; exon_id "ENSE00003746700"; exon_version "1"; tag "basic"; transcript_support_level "5";
+21	ensembl	CDS	21254	21418	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; protein_id "ENSP00000484302"; protein_version "1"; tag "basic"; transcript_support_level "5";
+21	ensembl	exon	22609	22644	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; exon_id "ENSE00003753253"; exon_version "1"; tag "basic"; transcript_support_level "5";
+21	ensembl	CDS	22609	22644	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; protein_id "ENSP00000484302"; protein_version "1"; tag "basic"; transcript_support_level "5";
+21	ensembl	exon	29786	29867	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; exon_id "ENSE00003717023"; exon_version "1"; tag "basic"; transcript_support_level "5";
+21	ensembl	CDS	29786	29814	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; protein_id "ENSP00000484302"; protein_version "1"; tag "basic"; transcript_support_level "5";
+21	ensembl	stop_codon	29815	29817	.	+	0	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "5";
+21	ensembl	five_prime_utr	11694	11880	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "5";
+21	ensembl	three_prime_utr	29818	29867	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "5";
+21	havana	transcript	11732	25972	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	exon	11732	11894	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003755585"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	CDS	11881	11894	.	+	0	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	start_codon	11881	11883	.	+	0	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	exon	14210	14250	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003742034"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	CDS	14210	14250	.	+	1	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	exon	15481	15831	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003714757"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	CDS	15481	15831	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	exon	17136	17426	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003728725"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	CDS	17136	17426	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	exon	21254	21418	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003746700"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	CDS	21254	21418	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	exon	22609	22644	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003753253"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	CDS	22609	22644	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	exon	23783	25972	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "7"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003759057"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	CDS	23783	23790	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "7"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	stop_codon	23791	23793	.	+	0	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "7"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	five_prime_utr	11732	11880	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	three_prime_utr	23794	25972	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	transcript	11732	23885	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2";
+21	havana	exon	11732	11894	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003755585"; exon_version "1"; transcript_support_level "2";
+21	havana	CDS	11881	11894	.	+	0	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000485557"; protein_version "1"; transcript_support_level "2";
+21	havana	start_codon	11881	11883	.	+	0	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2";
+21	havana	exon	14210	14250	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003742034"; exon_version "1"; transcript_support_level "2";
+21	havana	CDS	14210	14250	.	+	1	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000485557"; protein_version "1"; transcript_support_level "2";
+21	havana	exon	15633	15831	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003757607"; exon_version "1"; transcript_support_level "2";
+21	havana	CDS	15633	15808	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000485557"; protein_version "1"; transcript_support_level "2";
+21	havana	stop_codon	15809	15811	.	+	0	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2";
+21	havana	exon	17136	17426	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003760332"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	21254	21418	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003759504"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	22609	22644	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003757428"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	23783	23885	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "7"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003755111"; exon_version "1"; transcript_support_level "2";
+21	havana	five_prime_utr	11732	11880	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2";
+21	havana	three_prime_utr	15812	15831	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2";
+21	havana	three_prime_utr	17136	17426	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2";
+21	havana	three_prime_utr	21254	21418	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2";
+21	havana	three_prime_utr	22609	22644	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2";
+21	havana	three_prime_utr	23783	23885	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2";
+21	havana	transcript	11734	25326	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "2";
+21	havana	exon	11734	11894	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759226"; exon_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	CDS	11881	11894	.	+	0	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	start_codon	11881	11883	.	+	0	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "2";
+21	havana	exon	14210	14250	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003742034"; exon_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	CDS	14210	14250	.	+	1	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	exon	17136	17426	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003728725"; exon_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	CDS	17136	17426	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	exon	21254	21418	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003746700"; exon_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	CDS	21254	21418	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	exon	22609	22644	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003753253"; exon_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	CDS	22609	22644	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	exon	23783	25326	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760325"; exon_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	CDS	23783	23790	.	+	2	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	stop_codon	23791	23793	.	+	0	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "2";
+21	havana	five_prime_utr	11734	11880	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "2";
+21	havana	three_prime_utr	23794	25326	.	+	.	gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "2";
+21	havana	gene	62659	77068	.	+	.	gene_id "ENSG00000279687"; gene_version "1"; gene_name "FP565260.5"; gene_source "havana"; gene_biotype "lncRNA";
+21	havana	transcript	62659	77068	.	+	.	gene_id "ENSG00000279687"; gene_version "1"; transcript_id "ENST00000623188"; transcript_version "1"; gene_name "FP565260.5"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP565260.5-201"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "3";
+21	havana	exon	62659	62886	.	+	.	gene_id "ENSG00000279687"; gene_version "1"; transcript_id "ENST00000623188"; transcript_version "1"; exon_number "1"; gene_name "FP565260.5"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP565260.5-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759048"; exon_version "1"; tag "basic"; transcript_support_level "3";
+21	havana	exon	76818	77068	.	+	.	gene_id "ENSG00000279687"; gene_version "1"; transcript_id "ENST00000623188"; transcript_version "1"; exon_number "2"; gene_name "FP565260.5"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP565260.5-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759260"; exon_version "1"; tag "basic"; transcript_support_level "3";
+21	ensembl_havana	gene	68495	117614	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding";
+21	havana	transcript	68495	117128	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	exon	117099	117128	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760139"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	CDS	117099	117128	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	exon	115080	115193	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759878"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	CDS	115080	115193	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	exon	113957	114076	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003754178"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	CDS	113957	114076	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	exon	110912	111004	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003724593"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	CDS	110912	111004	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	exon	68885	68935	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759383"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	CDS	68885	68935	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	exon	68495	68497	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760307"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	CDS	68495	68497	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	transcript	68495	117128	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	exon	117099	117128	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760139"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	CDS	117099	117128	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485058"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	exon	115080	115193	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759878"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	CDS	115080	115193	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485058"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	exon	113957	114076	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003754178"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	CDS	113957	114076	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485058"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	exon	68885	68935	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759383"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	CDS	68885	68935	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485058"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	exon	68495	68497	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760307"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	CDS	68495	68497	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485058"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	transcript	105542	116344	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; tag "basic"; transcript_support_level "3";
+21	havana	exon	116285	116344	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003756626"; exon_version "1"; tag "basic"; transcript_support_level "3";
+21	havana	exon	115080	115193	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003756707"; exon_version "1"; tag "basic"; transcript_support_level "3";
+21	havana	CDS	115080	115129	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; protein_id "ENSP00000483086"; protein_version "2"; tag "basic"; transcript_support_level "3";
+21	havana	start_codon	115127	115129	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; tag "basic"; transcript_support_level "3";
+21	havana	exon	113957	114076	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003754178"; exon_version "1"; tag "basic"; transcript_support_level "3";
+21	havana	CDS	113957	114076	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; protein_id "ENSP00000483086"; protein_version "2"; tag "basic"; transcript_support_level "3";
+21	havana	exon	110912	111004	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003724593"; exon_version "1"; tag "basic"; transcript_support_level "3";
+21	havana	CDS	110912	111004	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; protein_id "ENSP00000483086"; protein_version "2"; tag "basic"; transcript_support_level "3";
+21	havana	exon	107892	108048	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003722853"; exon_version "1"; tag "basic"; transcript_support_level "3";
+21	havana	CDS	107892	108048	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; protein_id "ENSP00000483086"; protein_version "2"; tag "basic"; transcript_support_level "3";
+21	havana	exon	105542	106432	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003747879"; exon_version "2"; tag "basic"; transcript_support_level "3";
+21	havana	CDS	106307	106432	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; protein_id "ENSP00000483086"; protein_version "2"; tag "basic"; transcript_support_level "3";
+21	havana	stop_codon	106304	106306	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; tag "basic"; transcript_support_level "3";
+21	havana	five_prime_utr	116285	116344	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; tag "basic"; transcript_support_level "3";
+21	havana	five_prime_utr	115130	115193	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; tag "basic"; transcript_support_level "3";
+21	havana	three_prime_utr	105542	106303	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; tag "basic"; transcript_support_level "3";
+21	ensembl_havana	transcript	105542	117570	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	exon	117415	117570	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; exon_id "ENSE00003752103"; exon_version "3"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	CDS	117415	117555	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; protein_id "ENSP00000480313"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	start_codon	117553	117555	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	exon	117099	117151	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; exon_id "ENSE00003727348"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	CDS	117099	117151	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; protein_id "ENSP00000480313"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	exon	115080	115193	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; exon_id "ENSE00003759878"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	CDS	115080	115193	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; protein_id "ENSP00000480313"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	exon	113957	114076	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; exon_id "ENSE00003754178"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	CDS	113957	114076	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; protein_id "ENSP00000480313"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	exon	110912	111004	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; exon_id "ENSE00003724593"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	CDS	110912	111004	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; protein_id "ENSP00000480313"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	exon	107892	108048	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; exon_id "ENSE00003722853"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	CDS	107892	108048	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; protein_id "ENSP00000480313"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	exon	105542	106432	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "7"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; exon_id "ENSE00003747879"; exon_version "2"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	CDS	106307	106432	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "7"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; protein_id "ENSP00000480313"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	stop_codon	106304	106306	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "7"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	five_prime_utr	117556	117570	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	three_prime_utr	105542	106303	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)";
+21	ensembl_havana	transcript	106138	117573	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	exon	117415	117573	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; exon_id "ENSE00003759666"; exon_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	CDS	117415	117555	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; protein_id "ENSP00000485300"; protein_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	start_codon	117553	117555	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	exon	117099	117151	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; exon_id "ENSE00003727348"; exon_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	CDS	117099	117151	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; protein_id "ENSP00000485300"; protein_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	exon	115080	115193	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; exon_id "ENSE00003759878"; exon_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	CDS	115080	115193	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; protein_id "ENSP00000485300"; protein_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	exon	113957	114076	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; exon_id "ENSE00003754178"; exon_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	CDS	113957	114076	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; protein_id "ENSP00000485300"; protein_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	exon	107892	108048	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; exon_id "ENSE00003722853"; exon_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	CDS	107892	108048	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; protein_id "ENSP00000485300"; protein_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	exon	106138	106432	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; exon_id "ENSE00003758207"; exon_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	CDS	106307	106432	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; protein_id "ENSP00000485300"; protein_version "1"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	stop_codon	106304	106306	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	five_prime_utr	117556	117573	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; tag "basic"; transcript_support_level "1";
+21	ensembl_havana	three_prime_utr	106138	106303	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; tag "basic"; transcript_support_level "1";
+21	havana	transcript	109835	114069	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624748"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-209"; transcript_source "havana"; transcript_biotype "processed_transcript"; transcript_support_level "3";
+21	havana	exon	113957	114069	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624748"; transcript_version "2"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-209"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003756645"; exon_version "1"; transcript_support_level "3";
+21	havana	exon	110912	111004	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624748"; transcript_version "2"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-209"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003755477"; exon_version "1"; transcript_support_level "3";
+21	havana	exon	109835	110312	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624748"; transcript_version "2"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-209"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003755419"; exon_version "1"; transcript_support_level "3";
+21	havana	transcript	109835	117474	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2";
+21	havana	exon	117415	117474	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003758926"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2";
+21	havana	CDS	117415	117474	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2";
+21	havana	exon	117099	117151	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003727348"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2";
+21	havana	CDS	117099	117151	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2";
+21	havana	exon	115080	115193	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759878"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2";
+21	havana	CDS	115080	115193	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2";
+21	havana	exon	113957	114076	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003754178"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2";
+21	havana	CDS	113957	114076	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2";
+21	havana	exon	110912	111004	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003724593"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2";
+21	havana	CDS	110912	111004	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2";
+21	havana	exon	109835	110090	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003755057"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2";
+21	havana	CDS	109859	110090	.	-	1	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2";
+21	havana	stop_codon	109856	109858	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2";
+21	havana	three_prime_utr	109835	109855	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2";
+21	havana	transcript	109837	117614	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5";
+21	havana	exon	117415	117614	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003758517"; exon_version "1"; transcript_support_level "5";
+21	havana	CDS	117415	117555	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000485404"; protein_version "2"; transcript_support_level "5";
+21	havana	start_codon	117553	117555	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5";
+21	havana	exon	115080	115193	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003781030"; exon_version "1"; transcript_support_level "5";
+21	havana	CDS	115164	115193	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000485404"; protein_version "2"; transcript_support_level "5";
+21	havana	stop_codon	115161	115163	.	-	0	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5";
+21	havana	exon	113957	114076	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003757584"; exon_version "1"; transcript_support_level "5";
+21	havana	exon	110912	111004	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003755477"; exon_version "1"; transcript_support_level "5";
+21	havana	exon	109837	110090	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003760243"; exon_version "1"; transcript_support_level "5";
+21	havana	five_prime_utr	117556	117614	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5";
+21	havana	three_prime_utr	115080	115160	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5";
+21	havana	three_prime_utr	113957	114076	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5";
+21	havana	three_prime_utr	110912	111004	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5";
+21	havana	three_prime_utr	109837	110090	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5";
+21	havana	transcript	110650	117579	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; transcript_support_level "2";
+21	havana	exon	117415	117579	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003756995"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	117099	117151	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003758703"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	115080	115193	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003758611"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	113957	114076	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003757584"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	110650	111004	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003759960"; exon_version "1"; transcript_support_level "2";
+21	havana	transcript	111214	117128	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623390"; transcript_version "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-204"; transcript_source "havana"; transcript_biotype "processed_transcript"; transcript_support_level "3";
+21	havana	exon	117099	117128	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623390"; transcript_version "1"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-204"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003754910"; exon_version "1"; transcript_support_level "3";
+21	havana	exon	115080	115193	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623390"; transcript_version "1"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-204"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003758611"; exon_version "1"; transcript_support_level "3";
+21	havana	exon	113957	114076	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623390"; transcript_version "1"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-204"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003757584"; exon_version "1"; transcript_support_level "3";
+21	havana	exon	111214	111401	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623390"; transcript_version "1"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-204"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003756808"; exon_version "1"; transcript_support_level "3";
+21	havana	transcript	113687	114379	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000622915"; transcript_version "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; transcript_support_level "3";
+21	havana	exon	114226	114379	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000622915"; transcript_version "1"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003759301"; exon_version "1"; transcript_support_level "3";
+21	havana	exon	113687	114076	.	-	.	gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000622915"; transcript_version "1"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003758934"; exon_version "1"; transcript_support_level "3";
+21	havana	gene	105544	123006	.	-	.	gene_id "ENSG00000276612"; gene_version "3"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding";
+21	havana	transcript	105544	123006	.	-	.	gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3";
+21	havana	exon	122856	123006	.	-	.	gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "1"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003777763"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3";
+21	havana	CDS	122856	123006	.	-	2	gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "1"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485630"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3";
+21	havana	exon	122627	122701	.	-	.	gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "2"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003755072"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3";
+21	havana	CDS	122627	122701	.	-	1	gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "2"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485630"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3";
+21	havana	exon	115080	115193	.	-	.	gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "3"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759460"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3";
+21	havana	CDS	115080	115193	.	-	1	gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "3"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485630"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3";
+21	havana	exon	113957	114076	.	-	.	gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "4"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003757983"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3";
+21	havana	CDS	113957	114076	.	-	1	gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "4"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485630"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3";
+21	havana	exon	110912	111004	.	-	.	gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "5"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760127"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3";
+21	havana	CDS	110912	111004	.	-	1	gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "5"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485630"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3";
+21	havana	exon	107892	108048	.	-	.	gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "6"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759299"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3";
+21	havana	CDS	107892	108048	.	-	1	gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "6"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485630"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3";
+21	havana	exon	105544	106432	.	-	.	gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "7"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003757086"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3";
+21	havana	CDS	106307	106432	.	-	0	gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "7"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485630"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3";
+21	havana	stop_codon	106304	106306	.	-	0	gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "7"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3";
+21	havana	three_prime_utr	105544	106303	.	-	.	gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3";
+21	ensembl_havana	gene	120072	143859	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding";
+21	ensembl_havana	transcript	120072	143859	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	143824	143859	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003726066"; exon_version "3"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	143824	143841	.	-	0	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	start_codon	143839	143841	.	-	0	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	142162	142274	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003746673"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	142162	142274	.	-	0	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	137411	137505	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003741495"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	137411	137505	.	-	1	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	136980	137079	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003735185"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	136980	137079	.	-	2	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	136490	136633	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003723956"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	136490	136633	.	-	1	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	135859	135994	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "6"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003716502"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	135859	135994	.	-	1	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "6"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	135338	135567	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "7"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003720550"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	135338	135567	.	-	0	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "7"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	133292	133435	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "8"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003719765"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	133292	133435	.	-	1	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "8"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	132423	132493	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "9"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003736452"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	132423	132493	.	-	1	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "9"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	131733	131869	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "10"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003722093"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	131733	131869	.	-	2	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "10"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	130760	130908	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "11"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003744264"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	130760	130908	.	-	0	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "11"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	130478	130625	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "12"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003754065"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	130478	130625	.	-	1	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "12"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	130154	130304	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "13"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003752208"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	130154	130304	.	-	0	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "13"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	128899	129079	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "14"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003746456"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	128899	129079	.	-	2	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "14"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	126528	126675	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "15"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003731399"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	126528	126675	.	-	1	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "15"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	125136	125244	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "16"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003725608"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	125136	125244	.	-	0	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "16"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	124290	124355	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "17"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003727820"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	124290	124355	.	-	2	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "17"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	123103	123321	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "18"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003735444"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	123103	123321	.	-	2	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "18"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	122856	123006	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "19"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003741065"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	122856	123006	.	-	2	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "19"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	122627	122701	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "20"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003715825"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	122627	122701	.	-	1	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "20"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	exon	120072	120656	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "21"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003718829"; exon_version "2"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	CDS	120485	120656	.	-	1	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "21"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	stop_codon	120482	120484	.	-	0	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "21"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	five_prime_utr	143842	143859	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	ensembl_havana	three_prime_utr	120072	120481	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)";
+21	havana	transcript	122654	125244	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	exon	125136	125244	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003725608"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	CDS	125136	125244	.	-	0	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000488213"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	exon	124290	124355	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003727820"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	CDS	124290	124355	.	-	2	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000488213"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	exon	123562	123680	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003780753"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	CDS	123619	123680	.	-	2	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000488213"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	stop_codon	123616	123618	.	-	0	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	exon	123103	123321	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003782531"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	exon	122856	123006	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003759716"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	exon	122654	122701	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "6"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003775733"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	three_prime_utr	123562	123615	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	three_prime_utr	123103	123321	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	three_prime_utr	122856	123006	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	three_prime_utr	122654	122701	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5";
+21	havana	transcript	123400	132097	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000623011"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-203"; transcript_source "havana"; transcript_biotype "retained_intron"; transcript_support_level "2";
+21	havana	exon	131733	132097	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000623011"; transcript_version "1"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-203"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003756554"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	130760	130908	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000623011"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-203"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003755024"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	130478	130625	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000623011"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-203"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003757184"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	128899	130304	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000623011"; transcript_version "1"; exon_number "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-203"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003759985"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	125136	126675	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000623011"; transcript_version "1"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-203"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003759675"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	123400	124355	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000623011"; transcript_version "1"; exon_number "6"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-203"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003756393"; exon_version "1"; transcript_support_level "2";
+21	havana	transcript	126189	127140	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000624312"; transcript_version "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-204"; transcript_source "havana"; transcript_biotype "retained_intron"; transcript_support_level "4";
+21	havana	exon	127079	127140	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000624312"; transcript_version "2"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-204"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003758237"; exon_version "1"; transcript_support_level "4";
+21	havana	exon	126189	126675	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000624312"; transcript_version "2"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-204"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003756875"; exon_version "1"; transcript_support_level "4";
+21	havana	transcript	132423	133925	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000633442"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-205"; transcript_source "havana"; transcript_biotype "processed_transcript"; transcript_support_level "4";
+21	havana	exon	133625	133925	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000633442"; transcript_version "1"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-205"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003776830"; exon_version "1"; transcript_support_level "4";
+21	havana	exon	133292	133435	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000633442"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-205"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003778186"; exon_version "1"; transcript_support_level "4";
+21	havana	exon	132423	132493	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000633442"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-205"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003776945"; exon_version "1"; transcript_support_level "4";
+21	havana	transcript	132423	134646	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000633593"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-206"; transcript_source "havana"; transcript_biotype "processed_transcript"; transcript_support_level "3";
+21	havana	exon	134439	134646	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000633593"; transcript_version "1"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-206"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003777768"; exon_version "1"; transcript_support_level "3";
+21	havana	exon	133292	133435	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000633593"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-206"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003778186"; exon_version "1"; transcript_support_level "3";
+21	havana	exon	132423	132493	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000633593"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-206"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003776945"; exon_version "1"; transcript_support_level "3";
+21	havana	transcript	136550	143728	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4";
+21	havana	exon	143562	143728	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003777868"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4";
+21	havana	exon	142162	142274	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003782733"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4";
+21	havana	CDS	142162	142219	.	-	0	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499772"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4";
+21	havana	start_codon	142217	142219	.	-	0	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4";
+21	havana	exon	137411	137505	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003779772"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4";
+21	havana	CDS	137411	137505	.	-	2	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499772"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4";
+21	havana	exon	136980	137079	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003782084"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4";
+21	havana	CDS	136980	137079	.	-	0	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499772"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4";
+21	havana	exon	136550	136633	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003781998"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4";
+21	havana	CDS	136550	136633	.	-	2	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499772"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4";
+21	havana	five_prime_utr	143562	143728	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4";
+21	havana	five_prime_utr	142220	142274	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4";
+21	havana	transcript	136591	143448	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	exon	143261	143448	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003783072"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	exon	142162	142274	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003782733"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	CDS	142162	142219	.	-	0	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499619"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	start_codon	142217	142219	.	-	0	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	exon	137411	137505	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003779772"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	CDS	137411	137505	.	-	2	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499619"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	exon	136980	137079	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003782084"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	CDS	136980	137079	.	-	0	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499619"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	exon	136591	136633	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003776674"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	CDS	136591	136633	.	-	2	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499619"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	five_prime_utr	143261	143448	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	five_prime_utr	142220	142274	.	-	.	gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	gene	144700	154673	.	-	.	gene_id "ENSG00000280433"; gene_version "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding";
+21	havana	transcript	144700	152896	.	-	.	gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2";
+21	havana	exon	152719	152896	.	-	.	gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003756000"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2";
+21	havana	CDS	152719	152896	.	-	0	gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485615"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2";
+21	havana	exon	148281	148475	.	-	.	gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "2"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003757796"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2";
+21	havana	CDS	148281	148475	.	-	2	gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "2"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485615"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2";
+21	havana	exon	144700	147960	.	-	.	gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "3"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003755430"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2";
+21	havana	CDS	147725	147960	.	-	2	gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "3"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485615"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2";
+21	havana	stop_codon	147722	147724	.	-	0	gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "3"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2";
+21	havana	three_prime_utr	144700	147721	.	-	.	gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2";
+21	havana	transcript	146213	154673	.	-	.	gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623744"; transcript_version "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-202"; transcript_source "havana"; transcript_biotype "retained_intron"; transcript_support_level "2";
+21	havana	exon	152719	154673	.	-	.	gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623744"; transcript_version "1"; exon_number "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-202"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003758857"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	148281	148475	.	-	.	gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623744"; transcript_version "1"; exon_number "2"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-202"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003758141"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	146213	147960	.	-	.	gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623744"; transcript_version "1"; exon_number "3"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-202"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003758852"; exon_version "1"; transcript_support_level "2";
+21	havana	gene	221869	233034	.	-	.	gene_id "ENSG00000279669"; gene_version "1"; gene_name "AC079801.1"; gene_source "havana"; gene_biotype "lncRNA";
+21	havana	transcript	221869	233034	.	-	.	gene_id "ENSG00000279669"; gene_version "1"; transcript_id "ENST00000623753"; transcript_version "1"; gene_name "AC079801.1"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "AC079801.1-201"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "3";
+21	havana	exon	232904	233034	.	-	.	gene_id "ENSG00000279669"; gene_version "1"; transcript_id "ENST00000623753"; transcript_version "1"; exon_number "1"; gene_name "AC079801.1"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "AC079801.1-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756545"; exon_version "1"; tag "basic"; transcript_support_level "3";
+21	havana	exon	221869	222125	.	-	.	gene_id "ENSG00000279669"; gene_version "1"; transcript_id "ENST00000623753"; transcript_version "1"; exon_number "2"; gene_name "AC079801.1"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "AC079801.1-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758742"; exon_version "1"; tag "basic"; transcript_support_level "3";
+21	havana	gene	488352	491743	.	-	.	gene_id "ENSG00000279094"; gene_version "3"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA";
+21	havana	transcript	488352	491743	.	-	.	gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624261"; transcript_version "1"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-202"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "1";
+21	havana	exon	491570	491743	.	-	.	gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624261"; transcript_version "1"; exon_number "1"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003755185"; exon_version "1"; transcript_support_level "1";
+21	havana	exon	489200	489302	.	-	.	gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624261"; transcript_version "1"; exon_number "2"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756104"; exon_version "1"; transcript_support_level "1";
+21	havana	exon	488352	489010	.	-	.	gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624261"; transcript_version "1"; exon_number "3"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003755270"; exon_version "1"; transcript_support_level "1";
+21	havana	transcript	488356	491698	.	-	.	gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624859"; transcript_version "3"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-203"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "3";
+21	havana	exon	491570	491698	.	-	.	gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624859"; transcript_version "3"; exon_number "1"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-203"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759427"; exon_version "1"; tag "basic"; transcript_support_level "3";
+21	havana	exon	489268	489302	.	-	.	gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624859"; transcript_version "3"; exon_number "2"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-203"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756891"; exon_version "1"; tag "basic"; transcript_support_level "3";
+21	havana	exon	488356	489168	.	-	.	gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624859"; transcript_version "3"; exon_number "3"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-203"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003755916"; exon_version "1"; tag "basic"; transcript_support_level "3";
+21	havana	transcript	488758	491698	.	-	.	gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000623227"; transcript_version "1"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-201"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "2";
+21	havana	exon	491570	491698	.	-	.	gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000623227"; transcript_version "1"; exon_number "1"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759427"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	488758	489302	.	-	.	gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000623227"; transcript_version "1"; exon_number "2"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756302"; exon_version "1"; transcript_support_level "2";
+21	ensembl_havana	gene	542838	604081	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA";
+21	ensembl_havana	transcript	542838	579401	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000619252"; transcript_version "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-201"; transcript_source "ensembl_havana"; transcript_biotype "lncRNA"; tag "mRNA_end_NF"; transcript_support_level "2";
+21	ensembl_havana	exon	542838	543039	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000619252"; transcript_version "4"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-201"; transcript_source "ensembl_havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757879"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "2";
+21	ensembl_havana	exon	575024	575188	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000619252"; transcript_version "4"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-201"; transcript_source "ensembl_havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "2";
+21	ensembl_havana	exon	579220	579401	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000619252"; transcript_version "4"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-201"; transcript_source "ensembl_havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003725700"; exon_version "2"; tag "mRNA_end_NF"; transcript_support_level "2";
+21	havana	transcript	542860	579379	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623449"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-202"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "5";
+21	havana	exon	542860	543039	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623449"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758277"; exon_version "1"; tag "basic"; transcript_support_level "5";
+21	havana	exon	575024	575188	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623449"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; tag "basic"; transcript_support_level "5";
+21	havana	exon	575646	575700	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623449"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758960"; exon_version "1"; tag "basic"; transcript_support_level "5";
+21	havana	exon	579220	579379	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623449"; transcript_version "3"; exon_number "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758361"; exon_version "1"; tag "basic"; transcript_support_level "5";
+21	havana	transcript	542870	579884	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623436"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-203"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "2";
+21	havana	exon	542870	543039	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623436"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-203"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759200"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	579220	579884	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623436"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-203"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758019"; exon_version "1"; transcript_support_level "2";
+21	havana	transcript	542870	580429	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624627"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-204"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "2";
+21	havana	exon	542870	543039	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624627"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-204"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759200"; exon_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	exon	555326	555384	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624627"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-204"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003760163"; exon_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	exon	575024	575188	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624627"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-204"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	exon	579220	580429	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624627"; transcript_version "3"; exon_number "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-204"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758631"; exon_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	transcript	542880	577847	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "5";
+21	havana	exon	542880	543039	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003760225"; exon_version "1"; tag "basic"; transcript_support_level "5";
+21	havana	exon	568871	569009	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757773"; exon_version "1"; tag "basic"; transcript_support_level "5";
+21	havana	exon	574011	574176	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756099"; exon_version "1"; tag "basic"; transcript_support_level "5";
+21	havana	exon	575024	575188	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; exon_number "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; tag "basic"; transcript_support_level "5";
+21	havana	exon	577338	577847	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; exon_number "5"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756549"; exon_version "1"; tag "basic"; transcript_support_level "5";
+21	havana	transcript	542904	604081	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623914"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-206"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "5";
+21	havana	exon	542904	543039	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623914"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-206"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759834"; exon_version "1"; transcript_support_level "5";
+21	havana	exon	574011	574176	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623914"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-206"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756099"; exon_version "1"; transcript_support_level "5";
+21	havana	exon	575024	575188	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623914"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-206"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; transcript_support_level "5";
+21	havana	exon	603953	604081	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623914"; transcript_version "3"; exon_number "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-206"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756599"; exon_version "1"; transcript_support_level "5";
+21	havana	transcript	542908	575570	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624516"; transcript_version "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-207"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "5";
+21	havana	exon	542908	543039	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624516"; transcript_version "1"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-207"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759216"; exon_version "1"; transcript_support_level "5";
+21	havana	exon	575024	575570	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624516"; transcript_version "1"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-207"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003760051"; exon_version "1"; transcript_support_level "5";
+21	havana	transcript	542911	577987	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624412"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-208"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "1";
+21	havana	exon	542911	543039	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624412"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-208"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003743849"; exon_version "1"; transcript_support_level "1";
+21	havana	exon	575024	575188	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624412"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-208"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; transcript_support_level "1";
+21	havana	exon	577338	577987	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624412"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-208"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759693"; exon_version "1"; transcript_support_level "1";
+21	havana	transcript	542918	577385	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000622939"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-209"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	exon	542918	543039	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000622939"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-209"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003755533"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	exon	574011	574264	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000622939"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-209"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756887"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	exon	575024	575188	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000622939"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-209"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	exon	577338	577385	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000622939"; transcript_version "3"; exon_number "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-209"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756347"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "3";
+21	havana	transcript	555164	580435	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623050"; transcript_version "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-210"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "2";
+21	havana	exon	555164	555384	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623050"; transcript_version "1"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-210"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757026"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	575024	575188	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623050"; transcript_version "1"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-210"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	579220	580435	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623050"; transcript_version "1"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-210"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759657"; exon_version "1"; transcript_support_level "2";
+21	havana	transcript	571429	581205	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624444"; transcript_version "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-211"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "1";
+21	havana	exon	571429	575188	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624444"; transcript_version "1"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-211"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757240"; exon_version "1"; tag "basic"; transcript_support_level "1";
+21	havana	exon	577338	581205	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624444"; transcript_version "1"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-211"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756530"; exon_version "1"; tag "basic"; transcript_support_level "1";
+21	havana	transcript	572667	578729	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623887"; transcript_version "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-212"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "2";
+21	havana	exon	572667	574458	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623887"; transcript_version "1"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-212"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757844"; exon_version "1"; transcript_support_level "2";
+21	havana	exon	578548	578729	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623887"; transcript_version "1"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-212"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756828"; exon_version "1"; transcript_support_level "2";
+21	ensembl	transcript	574979	581204	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000611026"; transcript_version "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-213"; transcript_source "ensembl"; transcript_biotype "lncRNA"; transcript_support_level "2";
+21	ensembl	exon	574979	575188	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000611026"; transcript_version "1"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-213"; transcript_source "ensembl"; transcript_biotype "lncRNA"; exon_id "ENSE00003717842"; exon_version "1"; transcript_support_level "2";
+21	ensembl	exon	579220	581204	.	+	.	gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000611026"; transcript_version "1"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-213"; transcript_source "ensembl"; transcript_biotype "lncRNA"; exon_id "ENSE00003740631"; exon_version "1"; transcript_support_level "2";
+21	ensembl	gene	586591	586691	.	+	.	gene_id "ENSG00000277777"; gene_version "1"; gene_name "CU633967.2"; gene_source "ensembl"; gene_biotype "misc_RNA";
+21	ensembl	transcript	586591	586691	.	+	.	gene_id "ENSG00000277777"; gene_version "1"; transcript_id "ENST00000610788"; transcript_version "1"; gene_name "CU633967.2"; gene_source "ensembl"; gene_biotype "misc_RNA"; transcript_name "CU633967.2-201"; transcript_source "ensembl"; transcript_biotype "misc_RNA"; tag "basic"; transcript_support_level "NA";
+21	ensembl	exon	586591	586691	.	+	.	gene_id "ENSG00000277777"; gene_version "1"; transcript_id "ENST00000610788"; transcript_version "1"; exon_number "1"; gene_name "CU633967.2"; gene_source "ensembl"; gene_biotype "misc_RNA"; transcript_name "CU633967.2-201"; transcript_source "ensembl"; transcript_biotype "misc_RNA"; exon_id "ENSE00003748388"; exon_version "1"; tag "basic"; transcript_support_level "NA";
+21	havana	gene	692383	694838	.	-	.	gene_id "ENSG00000279186"; gene_version "1"; gene_name "FP236315.2"; gene_source "havana"; gene_biotype "TEC";
+21	havana	transcript	692383	694838	.	-	.	gene_id "ENSG00000279186"; gene_version "1"; transcript_id "ENST00000624506"; transcript_version "1"; gene_name "FP236315.2"; gene_source "havana"; gene_biotype "TEC"; transcript_name "FP236315.2-201"; transcript_source "havana"; transcript_biotype "TEC"; tag "basic"; transcript_support_level "NA";
+21	havana	exon	692383	694838	.	-	.	gene_id "ENSG00000279186"; gene_version "1"; transcript_id "ENST00000624506"; transcript_version "1"; exon_number "1"; gene_name "FP236315.2"; gene_source "havana"; gene_biotype "TEC"; transcript_name "FP236315.2-201"; transcript_source "havana"; transcript_biotype "TEC"; exon_id "ENSE00003756739"; exon_version "1"; tag "basic"; transcript_support_level "NA";
+21	havana	gene	694546	696361	.	+	.	gene_id "ENSG00000279784"; gene_version "1"; gene_name "FP236315.3"; gene_source "havana"; gene_biotype "lncRNA";
+21	havana	transcript	694546	696361	.	+	.	gene_id "ENSG00000279784"; gene_version "1"; transcript_id "ENST00000623587"; transcript_version "1"; gene_name "FP236315.3"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP236315.3-201"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "2";
+21	havana	exon	694546	694654	.	+	.	gene_id "ENSG00000279784"; gene_version "1"; transcript_id "ENST00000623587"; transcript_version "1"; exon_number "1"; gene_name "FP236315.3"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP236315.3-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758868"; exon_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	exon	696164	696361	.	+	.	gene_id "ENSG00000279784"; gene_version "1"; transcript_id "ENST00000623587"; transcript_version "1"; exon_number "2"; gene_name "FP236315.3"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP236315.3-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757033"; exon_version "1"; tag "basic"; transcript_support_level "2";
+21	havana	gene	696205	698657	.	-	.	gene_id "ENSG00000279064"; gene_version "1"; gene_name "FP236315.1"; gene_source "havana"; gene_biotype "lncRNA";
+21	havana	transcript	696205	698657	.	-	.	gene_id "ENSG00000279064"; gene_version "1"; transcript_id "ENST00000623723"; transcript_version "1"; gene_name "FP236315.1"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP236315.1-201"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "2";
+21	havana	exon	696205	696358	.	-	.	gene_id "ENSG00000279064"; gene_version "1"; transcript_id "ENST00000623723"; transcript_version "1"; exon_number "2"; gene_name "FP236315.1"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP236315.1-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756092"; exon_version "1"; tag "basic"; transcript_support_level "2";
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Binary file test-data/pbmc_1k_v2_L001.R2.10k.fastq.gz has changed
diff -r 178bdbdb6d24 -r e403d27e8f24 test-data/rnastar_index2_versioned.loc
--- a/test-data/rnastar_index2_versioned.loc	Thu Nov 28 15:55:47 2019 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,4 +0,0 @@
-##STAR versioned indexes
-#build_id	dbkey	display_name	path	with_gene_model	version
-000	?	test_index	${__HERE__}/test-cache/tophat-test	0	2.7.1a
-001	?	test_index_with_gene_model	${__HERE__}/test-cache/tophat-test	1	2.7.1a
diff -r 178bdbdb6d24 -r e403d27e8f24 test-data/rnastar_index2x_versioned.loc
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/rnastar_index2x_versioned.loc	Wed Aug 05 09:41:22 2020 -0400
@@ -0,0 +1,4 @@
+##STAR versioned indexes
+#build_id	dbkey	display_name	path	with_gene_model	version
+000	?	test_index	${__HERE__}/test-cache/tophat-test	0	2.7.4a
+001	?	test_index_with_gene_model	${__HERE__}/test-cache/tophat-test	1	2.7.4a
diff -r 178bdbdb6d24 -r e403d27e8f24 test-data/test-cache/tophat-test/Log.out
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test-cache/tophat-test/Log.out	Wed Aug 05 09:41:22 2020 -0400
@@ -0,0 +1,50 @@
+STAR version=2.7.5a
+STAR compilation time,server,dir=Tue Jun 16 12:17:16 EDT 2020 vega:/home/dobin/data/STAR/STARcode/STAR.master/source
+##### Command Line:
+STAR --runMode genomeGenerate --genomeDir tempstargenomedir --genomeFastaFiles tools/rgrnastar/test-data/tophat_test.fa --genomeSAindexNbases 5
+##### Initial USER parameters from Command Line:
+###### All USER parameters from Command Line:
+runMode                       genomeGenerate     ~RE-DEFINED
+genomeDir                     tempstargenomedir     ~RE-DEFINED
+genomeFastaFiles              tools/rgrnastar/test-data/tophat_test.fa        ~RE-DEFINED
+genomeSAindexNbases           5     ~RE-DEFINED
+##### Finished reading parameters from all sources
+
+##### Final user re-defined parameters-----------------:
+runMode                           genomeGenerate
+genomeDir                         tempstargenomedir
+genomeFastaFiles                  tools/rgrnastar/test-data/tophat_test.fa   
+genomeSAindexNbases               5
+
+-------------------------------
+##### Final effective command line:
+STAR   --runMode genomeGenerate   --genomeDir tempstargenomedir   --genomeFastaFiles tools/rgrnastar/test-data/tophat_test.fa      --genomeSAindexNbases 5
+----------------------------------------
+
+Number of fastq files for each mate = 1
+Finished loading and checking parameters
+--genomeDir directory created: tempstargenomedir/
+Jul 29 17:04:16 ... starting to generate Genome files
+tools/rgrnastar/test-data/tophat_test.fa : chr # 0  "test_chromosome" chrStart: 0
+Estimated genome size=201262144 = 262144 + 201000000
+GstrandBit=32
+Number of SA indices: 1300
+Jul 29 17:04:16 ... starting to sort Suffix Array. This may take a long time...
+Number of chunks: 1;   chunks size limit: 18599685304 bytes
+Jul 29 17:04:16 ... sorting Suffix Array chunks and saving them to disk...
+Writing 10400 bytes into tempstargenomedir//SA_0 ; empty space on disk = 66320359424 bytes ... done
+Jul 29 17:04:16 ... loading chunks from disk, packing SA...
+Jul 29 17:04:16 ... finished generating suffix array
+Jul 29 17:04:16 ... generating Suffix Array index
+Jul 29 17:04:16 ... completed Suffix Array index
+Jul 29 17:04:16 ... writing Genome to disk ...
+Writing 262144 bytes into tempstargenomedir//Genome ; empty space on disk = 66320355328 bytes ... done
+SA size in bytes: 5366
+Jul 29 17:04:16 ... writing Suffix Array to disk ...
+Writing 5366 bytes into tempstargenomedir//SA ; empty space on disk = 66320093184 bytes ... done
+Jul 29 17:04:16 ... writing SAindex to disk
+Writing 8 bytes into tempstargenomedir//SAindex ; empty space on disk = 66320084992 bytes ... done
+Writing 48 bytes into tempstargenomedir//SAindex ; empty space on disk = 66320084992 bytes ... done
+Writing 5971 bytes into tempstargenomedir//SAindex ; empty space on disk = 66320084992 bytes ... done
+Jul 29 17:04:16 ..... finished successfully
+DONE: Genome generation, EXITING
diff -r 178bdbdb6d24 -r e403d27e8f24 test-data/test-cache/tophat-test/genomeParameters.txt
--- a/test-data/test-cache/tophat-test/genomeParameters.txt	Thu Nov 28 15:55:47 2019 -0500
+++ b/test-data/test-cache/tophat-test/genomeParameters.txt	Wed Aug 05 09:41:22 2020 -0400
@@ -1,10 +1,13 @@
-### STAR   --runMode genomeGenerate   --genomeDir test-cache/tophat_test/   --genomeFastaFiles tophat_test.fa      --genomeSAindexNbases 5
+### STAR   --runMode genomeGenerate   --genomeDir tempstargenomedir   --genomeFastaFiles tools/rgrnastar/test-data/tophat_test.fa      --genomeSAindexNbases 5
 ### GstrandBit 32
-versionGenome	2.7.1a
-genomeFastaFiles	tophat_test.fa 
+versionGenome	2.7.4a
+genomeType	Full
+genomeFastaFiles	tools/rgrnastar/test-data/tophat_test.fa 
 genomeSAindexNbases	5
 genomeChrBinNbits	18
 genomeSAsparseD	1
+genomeTransformType	None
+genomeTransformVCF	-
 sjdbOverhang	0
 sjdbFileChrStartEnd	- 
 sjdbGTFfile	-
diff -r 178bdbdb6d24 -r e403d27e8f24 tool-data/rnastar_index2_versioned.loc.sample
--- a/tool-data/rnastar_index2_versioned.loc.sample	Thu Nov 28 15:55:47 2019 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,26 +0,0 @@
-#This is a sample file distributed with Galaxy that enables tools
-#to use a directory of rna-star indexed sequences data files. You will
-#need to create these data files and then create a rnastar_index2.loc
-#file similar to this one (store it in this directory) that points to
-#the directories in which those files are stored. The rnastar_index2.loc
-#file has this format (longer white space characters are TAB characters):
-#
-#<unique_build_id>   <dbkey>   <display_name>   <file_base_path>	<with_gene_model>	<version>
-#
-#The <with_gene_model> column should be 1 or 0, indicating whether the index
-#was built with annotations (i.e., --sjdbGTFfile and --sjdbOverhang were used)
-#or not.
-#
-#The <version> column indicates the STAR version that introduced the format of
-#the index, i.e., the oldest STAR version that could make use of the index.
-#
-#Note that STAR indices can become quite large. Consequently, it is only
-#advisable to create indices with annotations if it's known ahead of time that
-#(A) the annotations won't be frequently updated and (B) the read lengths used
-#will also rarely vary. If either of these is not the case, it's advisable to
-#create indices without annotations and then specify an annotation file and
-#maximum read length (minus 1) when running STAR.
-#
-#hg19   hg19    hg19 full   /mnt/galaxyIndices/genomes/hg19/rnastar	0	2.7.1a
-#hg19Ensembl   hg19Ensembl    hg19 full with Ensembl annotation   /mnt/galaxyIndices/genomes/hg19Ensembl/rnastar	1	2.7.1a
-
diff -r 178bdbdb6d24 -r e403d27e8f24 tool-data/rnastar_index2x_versioned.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/rnastar_index2x_versioned.loc.sample	Wed Aug 05 09:41:22 2020 -0400
@@ -0,0 +1,27 @@
+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory of rna-star indexed sequences data files.
+#You will need to create these data files and then create a
+#rnastar_index2x_versioned.loc file similar to this one (store it in this
+directory) that points to the directories in which those files are stored.
+#The rnastar_index2x_versioned.loc file has this format (longer white space
+#characters are TAB characters):
+#
+#<unique_build_id>   <dbkey>   <display_name>   <file_base_path>	<with_gene_model>	<version>
+#
+#The <with_gene_model> column should be 1 or 0, indicating whether the index
+#was built with annotations (i.e., --sjdbGTFfile and --sjdbOverhang were used)
+#or not.
+#
+#The <version> column indicates the STAR version that introduced the format of
+#the index, i.e., the oldest STAR version that could make use of the index.
+#
+#Note that STAR indices can become quite large. Consequently, it is only
+#advisable to create indices with annotations if it's known ahead of time that
+#(A) the annotations won't be frequently updated and (B) the read lengths used
+#will also rarely vary. If either of these is not the case, it's advisable to
+#create indices without annotations and then specify an annotation file and
+#maximum read length (minus 1) when running STAR.
+#
+#hg19   hg19    hg19 full   /mnt/galaxyIndices/genomes/hg19/rnastar	0	2.7.1a
+#hg19Ensembl   hg19Ensembl    hg19 full with Ensembl annotation   /mnt/galaxyIndices/genomes/hg19Ensembl/rnastar	1	2.7.1a
+
diff -r 178bdbdb6d24 -r e403d27e8f24 tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample	Thu Nov 28 15:55:47 2019 -0500
+++ b/tool_data_table_conf.xml.sample	Wed Aug 05 09:41:22 2020 -0400
@@ -1,6 +1,6 @@
 <tables>
-    <table name="rnastar_index2_versioned" comment_char="#" allow_duplicate_entries="False">
+    <table name="rnastar_index2x_versioned" comment_char="#" allow_duplicate_entries="False">
         <columns>value, dbkey, name, path, with_gene_model, version</columns>
-        <file path="tool-data/rnastar_index2_versioned.loc" />
+        <file path="tool-data/rnastar_index2x_versioned.loc" />
     </table>
 </tables>
diff -r 178bdbdb6d24 -r e403d27e8f24 tool_data_table_conf.xml.test
--- a/tool_data_table_conf.xml.test	Thu Nov 28 15:55:47 2019 -0500
+++ b/tool_data_table_conf.xml.test	Wed Aug 05 09:41:22 2020 -0400
@@ -1,7 +1,7 @@
 <tables>
     <!-- Location of rnastar indexes for testing -->
-    <table name="rnastar_index2_versioned" comment_char="#" allow_duplicate_entries="False">
+    <table name="rnastar_index2x_versioned" comment_char="#" allow_duplicate_entries="False">
         <columns>value, dbkey, name, path, with_gene_model, version</columns>
-        <file path="${__HERE__}/test-data/rnastar_index2_versioned.loc" />
+        <file path="${__HERE__}/test-data/rnastar_index2x_versioned.loc" />
     </table>
 </tables>