Mercurial > repos > iuc > rna_starsolo
changeset 8:00fbfac99d39 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 9c34fd08b619a09028707a52c868d9be1ca02a6b"
| author | iuc |
|---|---|
| date | Fri, 04 Dec 2020 22:05:36 +0000 |
| parents | e403d27e8f24 |
| children | ec9cbd6b9a49 |
| files | macros.xml rg_rnaStarSolo.xml |
| diffstat | 2 files changed, 16 insertions(+), 2 deletions(-) [+] |
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--- a/macros.xml Wed Aug 05 09:41:22 2020 -0400 +++ b/macros.xml Fri Dec 04 22:05:36 2020 +0000 @@ -5,7 +5,7 @@ the index versions in sync, but you should manually adjust the +galaxy version number. --> <!-- STAR version to be used --> - <token name="@VERSION@">2.7.5b</token> + <token name="@VERSION@">2.7.6a</token> <!-- STAR index version compatible with this version of STAR This is the STAR version that introduced the index structure expected by the current version. @@ -24,6 +24,16 @@ </requirements> </xml> + <xml name="edam"> + <edam_topics> + <edam_topic>topic_3170</edam_topic> + <edam_topic>topic_3308</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_0292</edam_operation> + </edam_operations> + </xml> + <xml name="index_selection" token_with_gene_model="0"> <param argument="--genomeDir" name="genomeDir" type="select" label="Select reference genome"
--- a/rg_rnaStarSolo.xml Wed Aug 05 09:41:22 2020 -0400 +++ b/rg_rnaStarSolo.xml Fri Dec 04 22:05:36 2020 +0000 @@ -1,9 +1,13 @@ -<tool id="rna_starsolo" name="RNA STARSolo" version="@VERSION@" profile="17.01"> +<tool id="rna_starsolo" name="RNA STARSolo" version="@VERSION@" profile="20.01" license="MIT"> <description>mapping, demultiplexing and gene quantification for single cell RNA-seq</description> + <xrefs> + <xref type="bio.tools">star</xref> + </xrefs> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> + <expand macro="edam"/> <expand macro="stdio" > <regex match="Segmentation fault" source="both" level="fatal" /> </expand>