Mercurial > repos > iuc > rna_starsolo
changeset 6:178bdbdb6d24 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 57f71aa633a43ab02bbf05acd0c6d7f406e01f1e"
| author | iuc |
|---|---|
| date | Thu, 28 Nov 2019 15:55:47 -0500 |
| parents | c23da6257d6a |
| children | e403d27e8f24 |
| files | macros.xml tool_data_table_conf.xml.sample tool_data_table_conf.xml.test |
| diffstat | 3 files changed, 6 insertions(+), 4 deletions(-) [+] |
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--- a/macros.xml Wed Oct 16 05:24:45 2019 -0400 +++ b/macros.xml Thu Nov 28 15:55:47 2019 -0500 @@ -1,8 +1,9 @@ <macros> <!-- REMEMBER to bump the version of rna_star_index_builder_data_manager whenever you make changes to the following two version tokens! - The data manager uses a symlink to this macro file to keep the versions in - sync. --> + The data manager uses a symlink to this macro file to keep the STAR and + the index versions in sync, but you should manually adjust the +galaxy + version number. --> <!-- STAR version to be used --> <token name="@VERSION@">2.7.2b</token> <!-- STAR index version compatible with this version of STAR @@ -18,6 +19,7 @@ <requirements> <requirement type="package" version="@VERSION@">star</requirement> <requirement type="package" version="1.9">samtools</requirement> + <yield /> </requirements> </xml>
--- a/tool_data_table_conf.xml.sample Wed Oct 16 05:24:45 2019 -0400 +++ b/tool_data_table_conf.xml.sample Thu Nov 28 15:55:47 2019 -0500 @@ -1,6 +1,6 @@ <tables> <table name="rnastar_index2_versioned" comment_char="#" allow_duplicate_entries="False"> - <columns>value, dbkey, name, path, with-gtf, version</columns> + <columns>value, dbkey, name, path, with_gene_model, version</columns> <file path="tool-data/rnastar_index2_versioned.loc" /> </table> </tables>
--- a/tool_data_table_conf.xml.test Wed Oct 16 05:24:45 2019 -0400 +++ b/tool_data_table_conf.xml.test Thu Nov 28 15:55:47 2019 -0500 @@ -1,7 +1,7 @@ <tables> <!-- Location of rnastar indexes for testing --> <table name="rnastar_index2_versioned" comment_char="#" allow_duplicate_entries="False"> - <columns>value, dbkey, name, path, with-gtf, version</columns> + <columns>value, dbkey, name, path, with_gene_model, version</columns> <file path="${__HERE__}/test-data/rnastar_index2_versioned.loc" /> </table> </tables>