Mercurial > repos > iuc > rnaspades
comparison rnaspades.xml @ 4:16e0eb91072f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rnaspades commit a66345b894a128f7cb44876cc9a51f48c5213d95"
author | iuc |
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date | Thu, 16 Sep 2021 15:25:47 +0000 |
parents | a8a278849c18 |
children | 1035adb112c0 |
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3:a8a278849c18 | 4:16e0eb91072f |
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1 <tool id="rnaspades" name="rnaSPAdes" version="3.9.0.2"> | 1 <tool id="rnaspades" name="rnaSPAdes" version="3.9.0.2"> |
2 <description>assembler for RNA-Seq data</description> | 2 <description>assembler for RNA-Seq data</description> |
3 <xrefs> | |
4 <xref type="bio.tools">rnaspades</xref> | |
5 </xrefs> | |
3 <requirements> | 6 <requirements> |
4 <requirement type="package" version="3.9.0">spades</requirement> | 7 <requirement type="package" version="3.9.0">spades</requirement> |
5 </requirements> | 8 </requirements> |
6 <stdio> | 9 <command detect_errors="exit_code"> |
7 <exit_code range="1:" /> | |
8 </stdio> | |
9 <command> | |
10 <![CDATA[ | 10 <![CDATA[ |
11 | 11 |
12 if [[ -n \$GALAXY_MEMORY_MB ]]; then | 12 if [ -n "\$GALAXY_MEMORY_MB" ]; then |
13 GALAXY_MEMORY_GB=\$(( GALAXY_MEMORY_MB / 1024 )); | 13 GALAXY_MEMORY_GB=\$(( GALAXY_MEMORY_MB / 1024 )); |
14 fi && | 14 fi && |
15 | 15 |
16 rnaspades.py -o . | 16 rnaspades.py -o . |
17 ## Forces unzipped output, faster | 17 ## Forces unzipped output, faster |