Mercurial > repos > iuc > rnaspades
comparison rnaspades.xml @ 11:675ee1aa5952 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 35f71aa486d8754ee6a8387659032fc7c93d1be3
| author | iuc |
|---|---|
| date | Wed, 10 Aug 2022 13:14:59 +0000 |
| parents | b66de1e9abfb |
| children | 28189050e437 |
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| 10:378e55aeeb25 | 11:675ee1aa5952 |
|---|---|
| 16 #end if | 16 #end if |
| 17 @PREPROCESS_NANOPORE_PACBIO_FILES@ | 17 @PREPROCESS_NANOPORE_PACBIO_FILES@ |
| 18 @PREPROCESS_CONTIGS_FILES@ | 18 @PREPROCESS_CONTIGS_FILES@ |
| 19 @PREPROCESS_FL_RNA_FILES@ | 19 @PREPROCESS_FL_RNA_FILES@ |
| 20 | 20 |
| 21 | 21 @OMP_THREADS@ |
| 22 ## run | 22 ## run |
| 23 rnaspades.py | 23 rnaspades.py |
| 24 -o 'output' | 24 -o 'output' |
| 25 @RESOURCES@ | 25 @RESOURCES@ |
| 26 @INPUT_READS_MAIN@ | 26 @INPUT_READS_MAIN@ |
| 236 | 236 |
| 237 .. class:: infomark | 237 .. class:: infomark |
| 238 | 238 |
| 239 **References** | 239 **References** |
| 240 | 240 |
| 241 More information can be found on on `github <https://github.com/ablab/spades>`_ and on the `project website <http://cab.spbu.ru/software/rnaspades>`_. | 241 More information can be found on on `github <https://github.com/ablab/spades>`_. |
| 242 ]]></help> | 242 ]]></help> |
| 243 <expand macro="citations"> | 243 <expand macro="citations"> |
| 244 <citation type="doi">10.1101/420208</citation> | 244 <citation type="doi">10.1101/420208</citation> |
| 245 </expand> | 245 </expand> |
| 246 </tool> | 246 </tool> |