Mercurial > repos > iuc > samtools_bam_to_cram
changeset 10:3a2d8de89c73 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools/bam_to_cram commit bfe97d9abaf5d56412b48b5a011f1c4337fa5118-dirty
| author | iuc |
|---|---|
| date | Wed, 12 Nov 2025 12:57:31 +0000 |
| parents | 85a38dffb93d |
| children | |
| files | macros.xml |
| diffstat | 1 files changed, 15 insertions(+), 3 deletions(-) [+] |
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--- a/macros.xml Thu Jun 19 12:57:45 2025 +0000 +++ b/macros.xml Wed Nov 12 12:57:31 2025 +0000 @@ -11,9 +11,9 @@ please only bump the minor version in order to let the requirement version catch up eventually). To find the tools check: `grep "<tool" . -r | grep -v VERSION_SUFFIX | cut -d":" -f 1` --> - <token name="@TOOL_VERSION@">1.21</token> - <token name="@VERSION_SUFFIX@">0</token> - <token name="@PROFILE@">22.05</token> + <token name="@TOOL_VERSION@">1.22</token> + <token name="@VERSION_SUFFIX@">1</token> + <token name="@PROFILE@">24.0</token> <token name="@FLAGS@"><![CDATA[ #set $flags = 0 #if $filter @@ -167,6 +167,18 @@ <xml name="seed_input"> <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> </xml> + + <!-- Include/exclude by flags + flag options --> + <xml name="inclusive_filter_macro" token_argument=""> + <param name="inclusive_filter" argument="@ARGUMENT@" type="select" multiple="True" label="Require that these flags are set"> + <expand macro="flag_options" /> + </param> + </xml> + <xml name="exclusive_filter_macro" token_argument=""> + <param name="exclusive_filter" argument="@ARGUMENT@" type="select" multiple="True" label="Exclude reads with any of the following flags set"> + <expand macro="flag_options" /> + </param> + </xml> <xml name="flag_options" token_s1="false" token_s2="false" token_s4="false" token_s8="false" token_s16="false" token_s32="false" token_s64="false" token_s128="false" token_s256="false" token_s512="false" token_s1024="false" token_s2048="false"> <option value="1" selected="@S1@">Read is paired</option> <option value="2" selected="@S2@">Read is mapped in a proper pair</option>