comparison samtools_consensus.xml @ 2:74e06ecd1f83 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools/samtools_consensus commit 19dd8b645a77899ff98d139d79de824a23f416bb

1:8feff7665181

        <!-- Gloabl Settings -->
        <section name="global_settings" title="Global Settings" expanded="no">
            <param name="minimum_depth" argument="--min-depth" type="integer" value="1" label="Minimum depth" help="The minimum depth required to make a call. Failing this depth check will produce consensus 'N', or absent if it is an insertion. Note this check is performed after filtering by flags and mapping/base quality"/>
            <!-- region -->
            <repeat name="reg_repeat" title="region" min="0" max="1">
                <param name="reg" type="text" optional="false" format="fasta" label="Region"/>
                <param name="start" type="integer" format="fasta" optional="true" label="Start"/>
                <param name="end" type="integer" format="fasta" optional="true" label="End"/>
            </repeat>
            <!-- use contional ref macro -->
             <expand macro="optional_reference" token_argument="--reference" token_help="Select a reference genome to guide consensus generation."/>
        </section>
        <!-- Output Options -->

2:74e06ecd1f83

        <!-- Gloabl Settings -->
        <section name="global_settings" title="Global Settings" expanded="no">
            <param name="minimum_depth" argument="--min-depth" type="integer" value="1" label="Minimum depth" help="The minimum depth required to make a call. Failing this depth check will produce consensus 'N', or absent if it is an insertion. Note this check is performed after filtering by flags and mapping/base quality"/>
            <!-- region -->
            <repeat name="reg_repeat" title="region" min="0" max="1">
                <param name="reg" type="text" optional="false" label="Region"/>
                <param name="start" type="integer" optional="true" label="Start"/>
                <param name="end" type="integer" optional="true" label="End"/>
            </repeat>
            <!-- use contional ref macro -->
             <expand macro="optional_reference" token_argument="--reference" token_help="Select a reference genome to guide consensus generation."/>
        </section>
        <!-- Output Options -->