Mercurial > repos > iuc > samtools_conssensus
changeset 2:74e06ecd1f83 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools/samtools_consensus commit 19dd8b645a77899ff98d139d79de824a23f416bb
| author | iuc |
|---|---|
| date | Wed, 12 Nov 2025 13:00:06 +0000 |
| parents | 8feff7665181 |
| children | |
| files | samtools_consensus.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/samtools_consensus.xml Wed Nov 12 12:51:35 2025 +0000 +++ b/samtools_consensus.xml Wed Nov 12 13:00:06 2025 +0000 @@ -140,9 +140,9 @@ <param name="minimum_depth" argument="--min-depth" type="integer" value="1" label="Minimum depth" help="The minimum depth required to make a call. Failing this depth check will produce consensus 'N', or absent if it is an insertion. Note this check is performed after filtering by flags and mapping/base quality"/> <!-- region --> <repeat name="reg_repeat" title="region" min="0" max="1"> - <param name="reg" type="text" optional="false" format="fasta" label="Region"/> - <param name="start" type="integer" format="fasta" optional="true" label="Start"/> - <param name="end" type="integer" format="fasta" optional="true" label="End"/> + <param name="reg" type="text" optional="false" label="Region"/> + <param name="start" type="integer" optional="true" label="Start"/> + <param name="end" type="integer" optional="true" label="End"/> </repeat> <!-- use contional ref macro --> <expand macro="optional_reference" token_argument="--reference" token_help="Select a reference genome to guide consensus generation."/>