comparison macros.xml @ 6:5160be5d088f draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools/samtools_coverage commit 19dd8b645a77899ff98d139d79de824a23f416bb

5:ddbd49b892e5

        tool's version is controlled by the TOOL_VERSION token 
        (because their version is ahead of the requirement version .. 
         please only bump the minor version in order to let the requirement
         version catch up eventually). To find the tools check:
        `grep "<tool" . -r | grep -v VERSION_SUFFIX | cut -d":" -f 1` -->
    <token name="@TOOL_VERSION@">1.21</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@PROFILE@">22.05</token>
    <token name="@FLAGS@"><![CDATA[
        #set $flags = 0
        #if $filter
            #set $flags = sum(map(int, str($filter).split(',')))
        #end if

        ((addmemory=addmemory*75/100)) &&
    ]]></token>
    <xml name="seed_input">
       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." />
    </xml>
    <xml name="flag_options" token_s1="false" token_s2="false" token_s4="false" token_s8="false" token_s16="false" token_s32="false" token_s64="false" token_s128="false" token_s256="false" token_s512="false" token_s1024="false" token_s2048="false">
        <option value="1" selected="@S1@">Read is paired</option>
        <option value="2" selected="@S2@">Read is mapped in a proper pair</option>
        <option value="4" selected="@S4@">Read is unmapped</option>
        <option value="8" selected="@S8@">Mate is unmapped</option>

6:5160be5d088f

        tool's version is controlled by the TOOL_VERSION token 
        (because their version is ahead of the requirement version .. 
         please only bump the minor version in order to let the requirement
         version catch up eventually). To find the tools check:
        `grep "<tool" . -r | grep -v VERSION_SUFFIX | cut -d":" -f 1` -->
    <token name="@TOOL_VERSION@">1.22</token>
    <token name="@VERSION_SUFFIX@">1</token>
    <token name="@PROFILE@">24.0</token>
    <token name="@FLAGS@"><![CDATA[
        #set $flags = 0
        #if $filter
            #set $flags = sum(map(int, str($filter).split(',')))
        #end if

        ((addmemory=addmemory*75/100)) &&
    ]]></token>
    <xml name="seed_input">
       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." />
    </xml>

    <!-- Include/exclude by flags + flag options -->
    <xml name="inclusive_filter_macro" token_argument="">
        <param name="inclusive_filter" argument="@ARGUMENT@" type="select" multiple="True" label="Require that these flags are set">
            <expand macro="flag_options" />
        </param>
    </xml>
    <xml name="exclusive_filter_macro" token_argument="">
        <param name="exclusive_filter" argument="@ARGUMENT@" type="select" multiple="True" label="Exclude reads with any of the following flags set">
            <expand macro="flag_options" />
        </param>
    </xml>
    <xml name="flag_options" token_s1="false" token_s2="false" token_s4="false" token_s8="false" token_s16="false" token_s32="false" token_s64="false" token_s128="false" token_s256="false" token_s512="false" token_s1024="false" token_s2048="false">
        <option value="1" selected="@S1@">Read is paired</option>
        <option value="2" selected="@S2@">Read is mapped in a proper pair</option>
        <option value="4" selected="@S4@">Read is unmapped</option>
        <option value="8" selected="@S8@">Mate is unmapped</option>