Mercurial > repos > iuc > samtools_cram_to_bam
comparison samtools_cram_to_bam.xml @ 5:634df184b2a8 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/cram_to_bam commit c5ded4208dd70e88596ddc725795a2401773f02d"
| author | iuc |
|---|---|
| date | Sat, 27 Nov 2021 12:31:35 +0000 |
| parents | 1551b0dd2d16 |
| children | 55ae400c0cc4 |
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| 4:1551b0dd2d16 | 5:634df184b2a8 |
|---|---|
| 21 #if $parameter_regions.target_region == "regions_bed_file" | 21 #if $parameter_regions.target_region == "regions_bed_file" |
| 22 -L '$parameter_regions.regions_bed_file' | 22 -L '$parameter_regions.regions_bed_file' |
| 23 #end if | 23 #end if |
| 24 -@ \$addthreads | 24 -@ \$addthreads |
| 25 -b | 25 -b |
| 26 -T '$reffa' | 26 -T "\$reffa" |
| 27 -o '$output_alignment' | 27 -o '$output_alignment' |
| 28 input.cram | 28 input.cram |
| 29 #if $parameter_regions.target_region == "region" | 29 #if $parameter_regions.target_region == "region" |
| 30 '$parameter_regions.region_string' | 30 '$parameter_regions.region_string' |
| 31 #end if | 31 #end if |