Mercurial > repos > iuc > samtools_depth
comparison samtools_depth.xml @ 5:772919943459 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_depth commit c508c3af0f4121dcc38e0be63db00a604e997b8a
| author | iuc |
|---|---|
| date | Thu, 19 Jun 2025 12:58:55 +0000 |
| parents | 971dc85e9441 |
| children |
comparison
equal
deleted
inserted
replaced
| 4:971dc85e9441 | 5:772919943459 |
|---|---|
| 133 <conditional name="cond_region"> | 133 <conditional name="cond_region"> |
| 134 <param name="select_region" value="bed"/> | 134 <param name="select_region" value="bed"/> |
| 135 <param name="input_bed" value="eboVir3.1.bed" ftype="bed" /> | 135 <param name="input_bed" value="eboVir3.1.bed" ftype="bed" /> |
| 136 </conditional> | 136 </conditional> |
| 137 <param name="input_bams" value="eboVir3.bam" ftype="bam" /> | 137 <param name="input_bams" value="eboVir3.bam" ftype="bam" /> |
| 138 <param name="header" value="true" /> | 138 <section name="output_options"> |
| 139 <param name="header" value="true" /> | |
| 140 </section> | |
| 139 <output name="output" file="samtools_depth_out5.tab" /> | 141 <output name="output" file="samtools_depth_out5.tab" /> |
| 140 </test> | 142 </test> |
| 141 <!-- 6) Tetsing argument -g --> | 143 <!-- 6) Tetsing argument -g --> |
| 142 <test> | 144 <test> |
| 143 <param name="input_bams" value="eboVir3.bam" ftype="bam" /> | 145 <param name="input_bams" value="eboVir3.bam" ftype="bam" /> |
| 144 <param name="required_flags" value="2,16,64" /> | 146 <section name="additional_options"> |
| 147 <param name="required_flags" value="2,16,64" /> | |
| 148 </section> | |
| 145 <output name="output" file="samtools_depth_out6.tab" /> | 149 <output name="output" file="samtools_depth_out6.tab" /> |
| 146 </test> | 150 </test> |
| 147 <!-- 7) Tetsing argument -G --> | 151 <!-- 7) Tetsing argument -G --> |
| 148 <test> | 152 <test> |
| 149 <param name="input_bams" value="eboVir3.bam" ftype="bam" /> | 153 <param name="input_bams" value="eboVir3.bam" ftype="bam" /> |
| 150 <param name="skipped_flags" value="2,16,64" /> | 154 <section name="additional_options"> |
| 155 <param name="skipped_flags" value="2,16,64" /> | |
| 156 </section> | |
| 151 <output name="output" file="samtools_depth_out7.tab" /> | 157 <output name="output" file="samtools_depth_out7.tab" /> |
| 152 </test> | 158 </test> |
| 153 </tests> | 159 </tests> |
| 154 <help> | 160 <help> |
| 155 **What it does** | 161 **What it does** |