Mercurial > repos > iuc > samtools_fixmate

annotate test-data/6_ct_replace.sam.expected @ 4:d2df79922531 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_fixmate commit 9c5a35ce695c3d134e41d8695487edd5f71ea33c
author iuc
date Sun, 08 Sep 2024 03:26:03 +0000
parents bc0cc7bfbfe9
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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bc0cc7bfbfe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_fixmate commit 0fe00966500158720fb63dc9b28f6a4ca0d1e1eb
iuc
parents:
diff changeset
1 @HD VN:1.4 SO:queryname
bc0cc7bfbfe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_fixmate commit 0fe00966500158720fb63dc9b28f6a4ca0d1e1eb
iuc
parents:
diff changeset
2 @SQ SN:1 LN:4569345
bc0cc7bfbfe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_fixmate commit 0fe00966500158720fb63dc9b28f6a4ca0d1e1eb
iuc
parents:
diff changeset
3 @RG ID:1#6 LB:1 SM:a
bc0cc7bfbfe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_fixmate commit 0fe00966500158720fb63dc9b28f6a4ca0d1e1eb
iuc
parents:
diff changeset
4 MS0_12500:1:2114:20577:3664#6 99 1 40346 23 75M = 40346 75 CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT CCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGD X0:i:1 X1:i:1 XA:Z:X,+8796,75M,2; MD:Z:22C52 RG:Z:1#6 XG:i:0 AM:i:23 NM:i:1 SM:i:23 XM:i:1 XO:i:0 XT:A:U MQ:i:23 MC:Z:75M ct:Z:1F75M-75T2R75M
bc0cc7bfbfe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_fixmate commit 0fe00966500158720fb63dc9b28f6a4ca0d1e1eb
iuc
parents:
diff changeset
5 MS0_12500:1:2114:20577:3664#6 147 1 40346 23 75M = 40346 -75 CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFCCF@GGGGGGGGGCCCCC X0:i:1 X1:i:1 XA:Z:X,-8796,75M,2; MD:Z:22C52 RG:Z:1#6 XG:i:0 AM:i:23 NM:i:1 SM:i:23 XM:i:1 XO:i:0 XT:A:U MQ:i:23 MC:Z:75M