Mercurial > repos > iuc > samtools_fixmate
comparison test-data/7_two_read_mapped.sam.expected @ 0:bc0cc7bfbfe9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_fixmate commit 0fe00966500158720fb63dc9b28f6a4ca0d1e1eb
| author | iuc |
|---|---|
| date | Fri, 28 Sep 2018 04:28:45 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:bc0cc7bfbfe9 |
|---|---|
| 1 @HD VN:1.4 SO:queryname | |
| 2 @SQ SN:ref1 LN:45 | |
| 3 @SQ SN:ref2 LN:40 | |
| 4 of1 99 ref1 10 30 23M = 8 21 AAGTCGGCAGCGTCAGATGTGTA ??????????????????????? MQ:i:30 MC:Z:23M | |
| 5 of1 147 ref1 8 30 23M = 10 -21 CTGTCTCTTATACACATCTCCTT ??????????????????????? MQ:i:30 MC:Z:23M | |
| 6 r001 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * MQ:i:30 MC:Z:8M4I4M1D3M | |
| 7 r001 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 MQ:i:30 MC:Z:9M | |
| 8 r002 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 | |
| 9 r003 33 ref1 9 30 5H6M = 29 25 AGCTAA * MQ:i:30 MC:Z:6H5M | |
| 10 r003 17 ref1 29 30 6H5M = 9 -25 TAGGC * MQ:i:30 MC:Z:5H6M | |
| 11 r004 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * | |
| 12 r007 9 ref1 9 30 5H6M = 9 0 AGCTAA * MC:Z:* | |
| 13 r007 5 ref1 9 30 * = 9 0 GGGGGG * MQ:i:30 MC:Z:5H6M | |
| 14 r008 13 ref1 9 30 5H6M = 9 0 AGCTAA * | |
| 15 r008 13 ref1 9 30 * = 9 0 GGGGGG * | |
| 16 uu1 4 * 0 30 * * 0 0 TAATTGGGTCTTCAGAGCACCTA ??????????????????????? | |
| 17 x1 0 ref2 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * | |
| 18 x2 0 ref2 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? | |
| 19 x3 0 ref2 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? | |
| 20 x4 0 ref2 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? | |
| 21 x5 0 ref2 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? | |
| 22 x6 0 ref2 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ??????????????????????? |