Mercurial > repos > iuc > samtools_fixmate
diff test-data/2_isize_overflow.sam.expected @ 0:bc0cc7bfbfe9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_fixmate commit 0fe00966500158720fb63dc9b28f6a4ca0d1e1eb
| author | iuc |
|---|---|
| date | Fri, 28 Sep 2018 04:28:45 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/2_isize_overflow.sam.expected Fri Sep 28 04:28:45 2018 -0400 @@ -0,0 +1,20 @@ +@HD VN:1.4 SO:queryname +@SQ SN:ref1 LN:45 +@SQ SN:ref2 LN:40 +of1 99 ref1 10 30 23M = 8 21 AAGTCGGCAGCGTCAGATGTGTA ??????????????????????? MQ:i:30 MC:Z:23M +of1 147 ref1 8 30 23M = 10 -21 CTGTCTCTTATACACATCTCCTT ??????????????????????? MQ:i:30 MC:Z:23M +r001 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * MQ:i:30 MC:Z:8M4I4M1D3M +r001 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 MQ:i:30 MC:Z:9M +r002 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 +r003 33 ref1 9 30 5H6M = 29 25 AGCTAA * MQ:i:30 MC:Z:6H5M +r003 17 ref1 29 30 6H5M = 9 -25 TAGGC * MQ:i:30 MC:Z:5H6M +r004 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * +r007 9 ref1 9 30 5H6M = 9 0 AGCTAA * MC:Z:* +r007 5 ref1 9 30 * = 9 0 GGGGGG * MQ:i:30 MC:Z:5H6M +u1 4 * 0 30 * * 0 0 TAATTGGGTCTTCAGAGCACCTA ??????????????????????? +x1 0 ref2 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * +x2 0 ref2 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? +x3 0 ref2 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? +x4 0 ref2 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? +x5 0 ref2 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? +x6 0 ref2 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ???????????????????????