Mercurial > repos > iuc > samtools_fixmate
diff samtools_fixmate.xml @ 5:c05afbeaf42d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_fixmate commit c508c3af0f4121dcc38e0be63db00a604e997b8a
| author | iuc |
|---|---|
| date | Thu, 19 Jun 2025 12:59:44 +0000 |
| parents | e5ece8fa99de |
| children |
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--- a/samtools_fixmate.xml Sun Sep 08 03:26:03 2024 +0000 +++ b/samtools_fixmate.xml Thu Jun 19 12:59:44 2025 +0000 @@ -61,13 +61,13 @@ <!-- test_cmd($opts,out=>'fixmate/4_reverse_read_pp_equal.bam.expected', cmd=>"$$opts{bin}/samtools fixmate${threads} -O sam $$opts{path}/fixmate/4_reverse_read_pp_equal.sam -");--> <test> <param name="bamfile" value="5_ct.sam" ftype="sam" /> - <param name="tempcigar" value="-c" /> + <param name="tempcigar" value="true" /> <output name="output" file="5_ct.bam.expected" ftype="qname_sorted.bam" lines_diff="4" /> </test> <!-- test_cmd($opts,out=>'fixmate/5_ct.bam.expected', cmd=>"$$opts{bin}/samtools fixmate${threads} -cO sam $$opts{path}/fixmate/5_ct.sam -");--> <test> <param name="bamfile" value="6_ct_replace.sam" ftype="sam" /> - <param name="tempcigar" value="-c" /> + <param name="tempcigar" value="true" /> <output name="output" file="6_ct_replace.bam.expected" ftype="qname_sorted.bam" lines_diff="4" /> </test> <!-- test_cmd($opts,out=>'fixmate/6_ct_replace.bam.expected', cmd=>"$$opts{bin}/samtools fixmate${threads} -cO sam $$opts{path}/fixmate/6_ct_replace.sam -");-->