Mercurial > repos > iuc > samtools_markdup

comparison test-data/stats.txt @ 9:40fa6c240105 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 9c5a35ce695c3d134e41d8695487edd5f71ea33c
author iuc
date Sun, 08 Sep 2024 03:26:14 +0000
parents d0a568e1904b
children
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8:a389f74c3630 9:40fa6c240105
1 COMMAND: samtools markdup -@ 0 -s coordsort.sam /tmp/tmpea8lprdd/files/2/2/4/dataset_224df993-f6bf-4c7d-99a1-2e9dd51c2a57.dat 1 COMMAND: samtools markdup -@ 0 -m t -s -f /tmp/tmpo1hsz7dc/job_working_directory/000/8/outputs/dataset_9e69bd59-3165-4ede-92bf-2f438627a6a1.dat -O BAM coordsort.sam /tmp/tmpo1hsz7dc/job_working_directory/000/8/outputs/dataset_ccf59cfe-ffbd-41d5-9412-d7a7ac6e65d9.dat
2 READ: 16 2 READ: 16
3 WRITTEN: 16 3 WRITTEN: 16
4 EXCLUDED: 3 4 EXCLUDED: 3
5 EXAMINED: 13 5 EXAMINED: 13
6 PAIRED: 10 6 PAIRED: 10
12 DUPLICATE NON PRIMARY: 0 12 DUPLICATE NON PRIMARY: 0
13 DUPLICATE NON PRIMARY OPTICAL: 0 13 DUPLICATE NON PRIMARY OPTICAL: 0
14 DUPLICATE PRIMARY TOTAL: 6 14 DUPLICATE PRIMARY TOTAL: 6
15 DUPLICATE TOTAL: 6 15 DUPLICATE TOTAL: 6
16 ESTIMATED_LIBRARY_SIZE: 4 16 ESTIMATED_LIBRARY_SIZE: 4
17